Rhodobacter xanthinilyticus: LPB142_13460
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Entry
LPB142_13460 CDS
T04631
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rhp
Rhodobacter xanthinilyticus
Pathway
rhp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rhp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LPB142_13460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhp03021
]
LPB142_13460
Transcription machinery [BR:
rhp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LPB142_13460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF1451
Motif
Other DBs
NCBI-ProteinID:
AOZ70200
UniProt:
A0A1D9MEJ8
LinkDB
All DBs
Position
complement(2759736..2761724)
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AA seq
662 aa
AA seq
DB search
MAAKDIDETKPDTSSDEDQSFDMSKAAVKRMIAEAKERGYITYDQLNAVMPPDQVSGDQI
EDVMSMLSEMGINVIEAEEGEEAEGGAIVETGSGSREVAVATTQSETLDRTDDPVRMYLR
EMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLNEEILLRDVID
LEATFGRSLDEDGEMDEPVVDGMEVEAQPKRPASDEPEYDADGNPLSRVDEDDDEDDGSN
MSLAAMEAALKPKVLETLEIIARDYTRLAEMQDLRMSATLNEDGTFSVAEEAAYQKLRSE
IVLLVNELHLHNNRIEALIDQCYGINRKIMSIDSGMVKLADAARINRREFIEEYRGYELD
PTWGDRMMAKGARAWTTLFEKSGDKVEDLRAEMAQVGQYVGVDISEFRRIVNQVQKGEKE
ARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA
TWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPL
EKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRVLASL
TPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFL
DQ
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaagacatcgacgaaacgaagcccgatacgtccagcgacgaggatcagtcc
ttcgatatgtcgaaggccgctgtgaagcggatgatcgcggaagcgaaggaacgcggctac
atcacctatgaccagctcaacgcggtgatgccccccgatcaggtctccggcgaccagatc
gaggacgtgatgtcgatgctctcggaaatggggatcaacgtcatcgaggcggaagagggc
gaggaggccgagggcggcgccatcgtcgagaccggctcgggctcgcgcgaggtcgcggtg
gcgacgacgcaaagcgagacgctcgaccgcaccgacgacccggtgcggatgtatctgcgc
gagatgggctcggtcgagctgctgtcgcgcgagggcgagatcgcgatcgccaagcgcatc
gaggcggggcgcaacacgatgatcgcggggctgtgcgaaagcccgctgaccttccaggcg
atcaccatctggcgcgacgaacttctcaacgaagagatcttgctgcgcgacgtgatcgac
ctcgaggcgactttcgggcgctcgctcgacgaggacggcgagatggatgagccggtcgtc
gacgggatggaggtcgaggcgcagcccaagcggcccgcctccgacgagcctgaatatgac
gccgacggcaacccgctgtcgcgcgtcgacgaggatgacgacgaggacgacggctcgaac
atgtcgctcgccgcgatggaggccgcgctcaagccgaaggtgctcgagacgctggagatc
atcgcgcgcgactatacccggcttgccgagatgcaggatctgcggatgtcggccacgctg
aacgaggacggcaccttctcggtggcggaagaggcggcctatcagaagctgcgctcggaa
atcgtgttgctggtcaacgagttgcatctgcacaacaaccggatcgaggcgctgatcgac
cagtgctacgggatcaaccgcaagatcatgtcgatcgacagcggcatggtgaagctcgcc
gatgcggcgcggatcaaccggcgcgaattcatcgaggaatatcgcggctacgagctcgac
ccgacctggggcgacaggatgatggccaagggcgcgcgcgcctggacgacgctgttcgag
aaatcgggtgacaaggtcgaggatctgcgcgccgagatggcgcaggtcggccaatatgtc
ggcgtcgatatctcggaattccgccggatcgtgaaccaggtccagaagggcgagaaagag
gcgcgtcaggccaagaaggaaatggtcgaggcgaacctgcgtctggtgatctcgatcgcc
aagaaatacaccaaccgcgggttgcaattccttgatctcattcaggaaggcaacatcggt
ctgatgaaggcggtggataaattcgaataccgccgcggctacaagttcagcacttatgcg
acctggtggatccgtcaggcgatcacccgttcgatcgccgatcaggcgcgcacgatccgc
atcccggtgcatatgatcgagacgatcaacaagctggtgcggaccgggcggcagatgctg
cacgagatcggccgcgagcccacgcccgaagagctggccgagaagctgcagatgccgctc
gagaaggttcgcaaggtgatgaagatcgccaaggagccgatttcgctcgaaaccccgatc
ggcgacgaggaagacagccagcttggcgatttcatcgaggacaagaacgcgatcctgccg
ctcgacagcgccattcaggagaacctgaaggagacgacgacgcgggttctggcgagcctg
acgccgcgcgaggagcgggtgctgcggatgcgcttcgggatcgggatgaacaccgaccac
acgctcgaagaggtcggccagcaattctcggtcacccgcgaacggatccgccagatcgag
gccaaggccttgagaaagctcaaacatccgagccggagccggaagctgcgcagcttcctc
gaccagtaa
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