Rhodobacter xanthinilyticus: LPB142_16780
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Entry
LPB142_16780 CDS
T04631
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rhp
Rhodobacter xanthinilyticus
Pathway
rhp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rhp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LPB142_16780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhp03400
]
LPB142_16780
Enzymes [BR:
rhp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LPB142_16780
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LPB142_16780
DNA repair and recombination proteins [BR:
rhp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LPB142_16780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AOZ70774
UniProt:
A0A1D9MFX0
LinkDB
All DBs
Position
3460337..3461182
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AA seq
281 aa
AA seq
DB search
MPELPEVETVREGLLPAMEGRVIARAEVNRPDLRWPLPERMAERITGARVERLRRRSKYI
LADLDTGESLLIHLGMSGRMLVSGVMLGGFHLDHPAPQKHDHVVLQMEGGARVTFNDARR
FGAMDLVRTDREAAHWLLAGLGPEPFGNEFNEEYLLERLKGRTMPIKSALLDQRILAGLG
NIYVSEVLFRAGIDPRRAAGKIAAKRLAGLVPIIREVLAEAIAAGGSSLRDHRQADGELG
YFQHSFRVYDREGEPCATCATPIRRIVQSSRSSFFCPACQR
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaacttcccgaggtcgagaccgtccgagaggggcttttgcccgcgatggagggc
cgggtgatcgcgcgcgcagaggtcaaccgccccgatctgcgctggcccctgcccgagcgg
atggccgagcggatcaccggcgcgcgggtcgagcggctgcggcggcgctcgaaatatatc
ctcgccgatctcgacaccggcgagagcctgctgatccatctcggcatgtcggggcggatg
ctggtttcgggcgtcatgctgggcgggttccacctcgaccaccccgccccgcaaaagcac
gaccacgtcgttttgcagatggagggcggcgcgcgcgtgaccttcaacgacgcccgccgc
tttggcgcgatggatctcgtgcgcaccgatcgcgaggcggcgcattggctcctcgcgggg
ctcggccccgagccttttggcaatgaattcaacgaggaatacctgctcgagcggctcaag
ggccgcacgatgccgatcaaatcggcgctcctggatcaacgcatccttgccgggctcggc
aatatctatgtctccgaagtgctcttccgcgccggcatcgacccgcgccgtgccgcgggc
aagatcgccgcgaaacgcctcgccggcctcgtgccgatcatccgcgaggtgctcgccgag
gcgatcgcggcggggggctcgtcgctgcgcgatcatcgtcaggccgatggcgaacttggc
tatttccagcacagtttccgcgtctatgaccgcgagggcgagccctgcgccacctgcgcc
accccgatccggcggatcgtgcaatcctcccgttcgagctttttctgccccgcctgtcaa
cgctga
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