Rhodococcus sp. PAMC28707: E5720_15245
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Entry
E5720_15245 CDS
T11377
Name
(GenBank) TM0106 family RecB-like putative nuclease
Organism
rhpc Rhodococcus sp. PAMC28707
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Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
RNase_H_2
AAA_11
AAA_30
AAA_19
PDDEXK_1
Viral_helicase1
NAT10_TcmA_helicase
NPHP3_N
AAA_22
UvrD_C_2
AAA_16
ResIII
AAA
nSTAND3
AAA_25
SLFN-g3_helicase
AAA_7
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QCB59654
LinkDB
All DBs
Position
complement(3309939..3313382)
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AA seq
1147 aa
AA seq
DB search
MFLLDDQVIYSASDLAAAASCEFGLLRRLDSLNGLVPRVAVEPDPMLERTSALGLAHERT
QLARFEKQFPGGVLTMERPGRTRQELADADWSTFTALTSRTPVLYQATFFDGRFLGFCDF
LVADGDRYGVYDTKLSRHAKVPALLQLAAYADSLQRGGITPSDHVHLMLGDGSTSSHTLT
EILAVYRQSRENLQRILDEHQAEGTAVGWADAKYSACGRCDTCSVQVEEHRDLVLVAGMR
SSARERLIDAGISTIEELAASAGPVNGMSERTSTSLRAQAALQVRQERTGAAEFDIFDAR
GLGSIPEPDPGDIFFDFEGDPLWADPANPNDWGLEYLFGVLNTDLSFEPFWAHDRSQERQ
ALIDFLAYVTARRAEYPNMHVYHYAPYEKTALLRLAGRYGVGEDVVDDLLRHEVLVDLYP
IVRTSVRIGARSYSIKKLEPLYMPEDRSGDVTNAAASIVEYAHWCEFRDAGEDAAAAELL
NEIAEYNRTDCVSTIELRDWLLARASDAGVTPRKPSEPVVEREDTATPLEISLGKYAGLP
WNRTSAQQAVAMYAGAVGFHRRERKPFWWAHFDRLTDPVDEWSDAADVMKIDHVEILHDW
MKTAPRQRVLRRKLRLVGELSNGVIGGVGHTVRLLYDNPSPEGLDKLHPTHRGSSMAKIV
DVGFAGTRDAVIVEESLRAGTEPYFDAPIATAPDRPVPTASLESAIETAATEVDDALPDL
PLTAVADLMALSPPRTTSGNPLPPVNGSDYASAITAALLDLDHSYLAVQGPPGTGKTYTA
SKVIAHLVREHHWRIGVVGQSHMVVDNLLATVVEAGVDARSVGKKAPTEQTVLKETEYPG
FVADADRGCVIGGTAWDFSHSTRVVPGSLDLLVIDEAGQFSLANTIAVAGAARNLLLLGD
PQQLPQVSQGTHPEPVDRSALGWLAAGHGALPADRGYFLATTWRMHPALCAPVSALAYEG
RLESNREATESRSLDGLAPGLHTVLVDHHGNSTSSPEEAAEIATRIQGLIGNEWTDPASF
EGTRALAASDFLVVAAYNAQVAAILAHLAEVGLDEVTVGTVDKIQGRQAPVVLVSMAASS
VDDVPRGMGFLLSRNRLNVAISRGQWAAFLVRSRSLTQHLPATPDGLVTLGTFMALSNSG
QGNSGQG
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
gtgttcctcttggacgatcaggtaatttacagcgccagcgatctcgcggcggccgcgtcc
tgcgagttcggcctgctgaggcgactcgacagcttgaacgggctcgtgccgcgtgtcgcc
gtcgaacccgatccgatgctggagcgaacatcagcactcggcctggcacacgaacgcacg
cagctggcacggttcgaaaagcagtttccgggcggagtgctgacgatggagaggccgggc
cgcacccgtcaagaactcgccgacgccgactggtcgacgttcacagcgttgacctcccgc
accccggtgctctatcaggcgaccttcttcgatggccgattcctcggattctgcgacttc
ctggttgccgacggggatcgctacggcgtctacgacaccaaattgtctcgtcatgcaaag
gttccggctctacttcagttggcggcgtacgccgactcattgcagcgcggtggaatcacg
ccgtccgatcacgtgcatctgatgctcggcgacggcagcacttcgagccacaccctcacc
gaaatacttgccgtctatcggcagtcccgcgagaacctccaacgcatactcgacgagcat
caggcggaggggaccgccgtcgggtgggcagatgcgaaatattccgcgtgcggccggtgc
gatacctgctcggtgcaggtcgaggaacaccgagacctggttcttgttgcgggtatgcgc
agttcggcgcgcgagcgactgatcgacgcaggcatctcgacgatcgaggagcttgcagcc
tcggccggtccagtaaacggcatgtcggagagaacatcgacgagtctgcgggcacaggcc
gcactgcaggtgcgtcaggagcgcaccggcgccgccgaattcgacatcttcgacgctcga
ggtctcggctcgatcccagaaccggaccccggtgacatcttcttcgacttcgaaggcgac
ccgctctgggccgatccggcaaatccgaacgactggggtctggagtacctcttcggtgtt
ctgaacacggatttgtcgttcgagccgttctgggcacacgatcgcagccaggaacgtcag
gcgctgatcgattttctcgcctacgtcacggccaggcgcgccgaatacccgaacatgcac
gtctaccactacgccccgtacgagaagacagcgctacttcggctggcaggccggtacggc
gtcggcgaggacgtcgtggacgacctgctgcgacacgaggtcctggtggatctgtatcca
atcgtccgcacgtcggttcgcatcggtgccaggtcgtacagcatcaagaagctcgaaccg
ctgtacatgcccgaggacagatcaggcgatgtcacgaatgcggcggcttcgatcgtcgag
tacgcacactggtgcgagttccgcgatgcaggcgaggatgcagcggcggcggaactgctg
aacgagatcgccgagtacaaccggacggactgcgtctcgacgatcgagctccgcgattgg
cttctcgccagggcctccgacgccggggtgacaccccgcaagccgagcgaaccggtcgtc
gaacgggaagacactgcaaccccactggaaatctcactcggcaagtacgccggcctgccc
tggaatcgaacatcggctcagcaggcggttgccatgtacgcgggcgccgtcggcttccac
cgacgcgagcgtaagcctttctggtgggctcacttcgacagactgaccgaccctgtcgac
gagtggtccgacgccgccgacgtcatgaagatcgatcacgtagaaattctccacgattgg
atgaaaaccgcaccacgccaacgagttctccgtagaaaattgagactcgtcggtgaactg
tccaacggtgtcatcggcggagtcggtcatacggtcagattgttgtacgacaatccgtca
cccgaggggttggacaagcttcacccgacccatcgtggttcgtccatggcgaagatcgtc
gacgtcgggttcgccggcacccgagatgccgtcatcgtcgaggaatctctgcgagcgggc
accgagccgtatttcgatgctccgatagcgacagctccggaccgccccgtacccaccgca
agcctcgagtccgcgatcgagaccgccgccaccgaggtcgatgacgcgctgcccgatctg
ccactgaccgccgtggccgatctgatggcgctgtcgccacctcgaaccacatcgggcaat
ccgcttccacccgtaaacggaagcgactatgcctcggcaatcactgcagcgcttctcgac
ctcgaccactcgtatctggcggttcaaggcccgcccggaaccggaaagacctacaccgca
tccaaggtcatagcccaccttgtgcgcgagcatcattggcgcatcggagttgtcggacaa
tcacacatggtggtcgacaatctcctcgccaccgtcgtcgaggcgggagtcgacgcccga
tcagtcgggaagaaagcaccgaccgaacagaccgtactgaaggaaaccgagtaccccggc
ttcgtcgccgacgcagatcgcggctgcgtcatcggcggtacagcgtgggacttctcgcat
tccacccgggtagtgccagggtcgctcgatcttctcgtcatcgacgaagccggccaattc
tcgctggccaacaccatcgccgtcgccggtgcagctcgaaatctgttgctgctgggcgat
ccacaacaactaccccaggtaagccagggaacccaccccgaacccgtcgaccgatcagcg
ctcggttggctcgctgccggacacggcgcccttcctgccgatcgcggctacttcctggcc
accacgtggcgtatgcacccggcactgtgcgcgccggtatcggcgctggcgtacgagggg
cgcctcgagtcgaaccgcgaggcgaccgagtcaagaagcctcgacggactcgcccccggc
ctgcacaccgtccttgtcgatcatcacgggaactcgacgagctcgccggaggaagccgcg
gaaatcgccactcgtattcaggggctgatcggcaacgagtggacggatcctgcatcgttc
gaagggacccgagcgctcgcggcatcggactttctcgtcgtcgccgcatacaacgcgcag
gtcgccgccatcctcgcccacctcgcagaggtcggcctcgacgaggtgacggtgggaacc
gtcgacaagattcaaggccgtcaggctccggtggtcctcgtctcgatggccgcctcgtcc
gtcgacgacgtcccccgcggaatgggatttctgctctcacgcaacagactgaacgtggca
atctcgcgtggccagtgggctgcatttctcgtccggtcccgcagcctcactcagcacctc
cccgcaacccccgacgggctcgtcacattgggaaccttcatggcactgagtaacagcggg
caggggaacagcgggcaggggtaa
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