Rhodococcus sp. PAMC28707: E5720_15260
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Entry
E5720_15260 CDS
T11377
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhpc Rhodococcus sp. PAMC28707
Pathway
rhpc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhpc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E5720_15260
Enzymes [BR:
rhpc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E5720_15260
Messenger RNA biogenesis [BR:
rhpc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E5720_15260
Ribosome biogenesis [BR:
rhpc03009
]
Prokaryotic type
rRNA helicases
E5720_15260
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Gene cluster
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NCBI-ProteinID:
QCB61087
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Position
3316249..3318036
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AA seq
595 aa
AA seq
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MTSDEAISNRSAPAPTDSTPAPDAASEEAPQLTFADLGIEERVLQALRDVGYETPSPIQA
ATIPPLMAGNDVVGLAQTGTGKTAAFAVPILSRLDVSRRVPQALVLAPTRELALQVAEAF
GKYASHIPGLHILPIYGGQAYGIQLSGLRKGAQIIVGTPGRVIDHLEKGTLDLSALEYLV
LDEADEMLKMGFQEDVERILSDTPEYKQVALFSATMPAAIRKISKQYLHDPVEITVKTKT
STAPNITQRYVQVAHQRKLEALTRIFEVEEFEAMIMFVRTKQATEELAEKLRARGFSAAA
INGDIVQAQRERTIGQLKNGQIDILVATDVAARGLDVDRISHVINYDIPHDTESYVHRIG
RTGRAGRAGQALLFVAPRERHLLKAIERATRQPITEMQLPSVDDVNAQRVTKFGDSITES
LESENLALFRRLVEDYVQAHDVPLADIAAALAVQSRDGEAFLLKPEPPAPPRAPREPREP
RPPRSFDADAADSHHRKTGQEMATYRISVGKRHHVAPGAIVGAIANEGGLRRSDFGHISI
RPDHSLVELPADLADETVEALRRTRISGVLIQLTPDSGPPGRSGGGSKFKGKPRR
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
gtgacgagtgacgaagcaatttcgaataggtcggcaccggcgcccaccgactcgaccccc
gccccggacgctgcgtccgaagaagctccgcagcttactttcgccgacctcggaatcgaa
gaacgtgttctgcaggcactgcgggacgtcggatacgagacaccgtcgcccattcaggcg
gccaccattccgccgctgatggcaggcaacgacgtcgtcggattggcgcaaaccggtacc
ggcaaaactgcggcgttcgcggtgccgatcctctcgcggctcgacgtgtcgcggcgtgtt
ccgcaggcgctggtgttggcaccgacgcgtgagctcgcgctgcaggtggccgaggcgttc
ggtaagtacgcctcgcacatccctggcctgcacatcctgcctatctacggcgggcaggca
tacggtattcagctctcgggtctgcgcaagggtgcgcagatcatcgtgggtacccccggt
cgcgtcatcgatcacctggagaagggcactctcgacctgtccgccctcgagtatctggtc
ctcgacgaggccgacgagatgctcaagatgggcttccaagaggatgtcgagcgaattctc
tcggatactcccgaatacaagcaggtcgctctcttctcggccacgatgcctgctgcgatc
cgcaagatctccaagcagtacttgcacgatcctgtcgagatcaccgtcaagaccaagacc
tcgacggcaccgaacatcacacagcgctacgtgcaggtcgcacatcagcgcaagctggaa
gcactgacacggatcttcgaagtcgaagaattcgaagcgatgatcatgttcgttcgaacc
aaacaggccaccgaggagctcgccgagaagctgcgtgcacggggattctccgcggcagcg
atcaacggtgacatcgtgcaggctcagcgcgagcggaccatcggtcagctcaagaacggc
cagatcgacattctcgttgccaccgacgtcgcggcgcgtggtctcgatgtcgaccgcatt
tcacacgtcatcaactacgacattccgcatgacaccgagtcgtacgtgcaccgcatcggt
cgtaccgggcgcgcgggccgagccggtcaggcgttgctgttcgtagcgccacgggagcgt
cacctgctcaaagcgatcgagcgtgcgacgcgtcagccgatcaccgagatgcagttgccg
agtgtcgacgacgtcaacgcgcaacgcgtcaccaagttcggggactcgatcaccgagagc
ctcgagagcgagaatctcgctctgttccgccggctcgtcgaggattacgtgcaggcgcac
gacgtcccgctcgcggatatcgcagcagcgctcgccgtgcagtcccgcgacggtgaagcg
ttcctgctcaagcccgagccgcccgccccgccgcgcgcaccccgggagccacgcgagccg
aggcctccgcgttcgttcgacgcagacgcggccgattcgcatcaccgcaagaccggtcag
gagatggcgacgtatcggatcagcgtcggcaagcgtcatcacgtcgcgccgggtgccatc
gtcggagctatcgcgaacgagggcggactacgacgcagcgatttcgggcacatcagcatc
agaccggaccactcgctggtggaactgcctgcggacctggccgacgagacggtcgaagcg
ttgcgtcgtactcggatcagtggagtgctgattcagctgacccccgactccgggcctccc
ggacgcagtggcggcggcagcaagttcaagggcaagcccaggcgctga
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