Rhodococcus sp. PD04: U9J23_00025
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Entry
U9J23_00025 CDS
T11027
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
rhpd Rhodococcus sp. PD04
Brite
KEGG Orthology (KO) [BR:
rhpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhpd03032
]
U9J23_00025 (gyrB)
03400 DNA repair and recombination proteins [BR:
rhpd03400
]
U9J23_00025 (gyrB)
Enzymes [BR:
rhpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
U9J23_00025 (gyrB)
DNA replication proteins [BR:
rhpd03032
]
Prokaryotic type
DNA Topoisomerases
U9J23_00025 (gyrB)
DNA repair and recombination proteins [BR:
rhpd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
U9J23_00025 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
Motif
Other DBs
NCBI-ProteinID:
WSE22757
LinkDB
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Position
5496..7532
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AA seq
678 aa
AA seq
DB search
MAAQKSNNNKSEYGASSITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMA
GYASKVEVTLLADGGVQVVDDGRGIPVGMHASGVPTVEVVLTQLHAGGKFDSDAYAVSGG
LHGVGISVVNALSTTLEVEIDNDGYHWEQTYTASKPGELIRGEATKRTGTTVRFWPDPEI
FETTTFNFETVARRLQEMAFLNKGLTITLTDERVAPEEVTDEDVPETAEAPKTAEDQAVE
AAEPEVHKVKVRTYHYPGGLEDYVRHINRTKTPIHNSVVGFTAKGTGHELEVAMQWNSGY
SESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKDKKLLKEKDPNLTGDDIREGLAAI
ISVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHISHWFEANPADAKTIVTKAVSSAHAR
VAARKARELVRRKSATDIGGLPGKLADCRSKDPSKCEIYIVEGDSAGGSAKSGRDSMYQA
ILPLRGKIINVEKARIDKVLKNAEVQSIITAFGTGIHEEFDISKLRYHKIVLMADADVDG
QHIATLLLTLLFRFMRPLVEEGHVFLAQPPLYKLKWQRSEPEFAYSDRERDVLLEAGLKA
GKKINKDDGIQRYKGLGEMNAKELWETTMDPSVRVLRQVTLDDAAAADELFSVLMGEDVA
ARRSFITRNAKDVRFLDV
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
gtggctgcccagaagtcgaacaacaacaagagtgagtacggtgcgtcgtccatcaccgtc
ctcgagggtctcgaggcggtgcgcaagcgccccggtatgtacatcggttccaccggagag
cgtggcctgcaccacctgatctgggaggtcgtcgacaactccgtcgacgaggccatggcc
ggatacgcatcgaaggtggaggtcaccctcctcgccgacggcggcgtccaggtcgtcgac
gacggtcgcggtatccccgtcggtatgcacgcctccggcgtccccactgtcgaggtcgtc
ctcacccagctccacgccggcggcaagttcgactccgatgcctacgccgtctccggcggt
ctgcacggtgtcggtatctccgtggtgaacgccctgtccacgaccctcgaggtcgagatc
gacaacgacggctaccactgggagcagacgtacaccgcctcgaagccgggcgagctcatc
cgcggcgaggccaccaagcgcaccggtaccaccgtccgtttctggccggacccggagatc
ttcgagaccacgacgttcaacttcgagaccgtcgcgcgtcgcctgcaggagatggcgttc
ctcaacaagggactgaccatcaccctcaccgacgagcgtgtcgcgcccgaagaggtcacc
gacgaggacgtcccggagaccgccgaggcaccgaagaccgccgaggaccaggccgtcgag
gccgccgagcccgaggtgcacaaggtcaaggtccgcacctaccactacccgggtggtctc
gaggactacgtgcgccacatcaaccgcacgaagacgccgatccacaactcggtcgtcggg
ttcaccgccaagggcaccggtcacgaactcgaggtcgcgatgcagtggaactcgggttac
tccgaatccgtccacaccttcgccaacaccatcaacacccacgagggcggcacgcacgag
gaaggcttccgtgcggcgctgaccacggtcgtcaaccgttacgcgaaggacaagaagctc
ctcaaggagaaggatccgaacctcacgggcgacgacatccgcgagggtctcgcggccatc
atctccgtcaaggtcggtgagccgcagttcgagggccagacgaagaccaagctcggcaac
accgaggtgaagtccttcgtgcagaaggcgtgcaacgagcacatctcgcactggttcgag
gccaacccggccgatgcgaagacgatcgtcaccaaggccgtgtcgtcggcgcacgcccgc
gtcgccgcccgtaaggcgcgcgagctcgtccgccgcaagagcgcgaccgacatcggtggt
ctgccgggcaagctcgccgactgccggtcgaaggacccgagcaagtgcgagatctacatc
gtggagggcgactccgcaggtggctccgccaagtcgggtcgcgactcgatgtaccaagcg
atccttccgttgcgcggcaagatcatcaacgtcgagaaggcccgcatcgacaaggtcctc
aagaacgccgaggtccagtcgatcatcacggcgttcggtaccggcatccacgaggaattc
gacatctcgaagctgcggtaccacaagatcgtcctgatggccgacgccgacgtcgacggt
cagcacatcgcgacgctgctgctcacactgctcttccgcttcatgcggccgctggtcgag
gaaggccacgtcttcctggcgcagccgccgctgtacaagctcaagtggcagcgcagcgag
ccggagttcgcgtactccgaccgcgagcgcgatgtcctgctcgaggcgggtctgaaggcc
ggcaagaagatcaacaaggacgacggcatccagcgctacaagggcctcggtgagatgaac
gccaaggagttgtgggagaccaccatggatccgagcgtccgcgtcctgcgtcaggtgacc
cttgacgacgccgctgcggccgacgagctgttcagcgtcctcatgggtgaggacgtcgcg
gcgcgacgcagcttcatcacgcgcaatgcgaaggatgtccgcttcctcgacgtctga
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