Rhodococcus sp. PD04: U9J23_01085
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Entry
U9J23_01085 CDS
T11027
Symbol
pks13
Name
(GenBank) polyketide synthase Pks13
KO
K12437
polyketide synthase 13
Organism
rhpd Rhodococcus sp. PD04
Pathway
rhpd00074
Mycolic acid biosynthesis
rhpd01100
Metabolic pathways
rhpd01110
Biosynthesis of secondary metabolites
Module
rhpd_M00887
Mycolic acid biosynthesis, meromycolic acid + alpha-carboxyacyl-CoA + trehalose => TMM => TDM/mAGP/GMM
Brite
KEGG Orthology (KO) [BR:
rhpd00001
]
09100 Metabolism
09103 Lipid metabolism
00074 Mycolic acid biosynthesis
U9J23_01085 (pks13)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
rhpd01004
]
U9J23_01085 (pks13)
Lipid biosynthesis proteins [BR:
rhpd01004
]
Polyketide synthase
Modular PKS
U9J23_01085 (pks13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ketoacyl-synt
Acyl_transf_1
Ketoacyl-synt_C
PP-binding
Thioesterase
KAsynt_C_assoc
ACP_SdgA_C
Thiolase_N
RhiE-like_linker
CurL-like_PKS_C
Abhydrolase_6
Abhydrolase_3
Motif
Other DBs
NCBI-ProteinID:
WSE25280
LinkDB
All DBs
Position
232994..237901
Genome browser
AA seq
1635 aa
AA seq
DB search
MTVAQLREWLRNWIADATGQPVSQISDDRPMEEFGLSSRDAVAMAGEIEELLGVTLNATI
AYQHPTIASLATRIIEGEPEAPAEDDSALYTVGAVAGSKDVAIVGLSTRFPGHVDTPEQM
WDLLASGRDGISDLPEGRWSEFENDPAVWESIRNANTKGGYLDDVKGFDAEFFAMSPREV
EMVDPQQRLALELTWEALEHAHIPPSELKGGSVGVFIGSSASDYMLLAVGDPSAAHPYAL
TGTSTAVIANRVSYFYDFHGPSVTLDTACSSSLVAVHQAVRALRNGEADVALAGGVNMLL
APAGTLGFDELGVMAPDGRIKAFSADADGMIRAEGGGLVVLKRLEDAERDGDNILAVIAG
SAVNQDGRSNGLAAPNPEAQVDVLRRAYRDAQILPSGVDYIEAHGTGTVLGDPIEADALG
RVIGRGREDDKPVLLGSAKTNFGHLESAAGAAGLIKVVLAMQNDQLPPTLNYTAPNPYIP
FDSAHLKVIPEGAKWPRYTGRAVAGVSGFGFGGTNAHVVVHEYTGPEGQEAAEAEVEVLP
EEIPAAAETTEQARELPVLLAVSAAMPSRRRRAAADLADWLETEKGSTTPLADVARTLSR
RNHGRSRAIVVASNHGEAIAGLRAVAAGKPAQGVFNADAPASKGAVWVLSGFGAQHRKMA
KQLYLENPVFAAAVDEVDELIYDESGYSMKEKFLDDAQDYDVETAQVGIFTIQIGLAALL
RHHGAEPAAVVGHSMGEAAGAYISGGLSLEDAVRVICSRSRLMGEAESGLTGDDIRLMAL
VEYSAAEITDVLPDFPQLEVCVYAAPTHTVIGGPQEQVNAIVARAEAEEKFARVLQTKGA
SHTSQVDPILGELAAELAGIEPHRLKVDLYSSVDQETLYRAGHDGIHDVEYWTKGMRHSV
YFTQAIRQALSDGHTTFVELNANPATLMSVAATAFDAGVQDGQFIQTLKRKEDESLGVLA
ALAQLYVHGQSVDLKTLLPEGDYADLPRTAFLRKPYWVDASIGTSGNGRVPGARVALPDG
RYVWEVQASAVTDAAELVVAAASQVLSDVTLTASIPHTDVPATGTLTTTLTRHPGGASLQ
VHANTGDGFTLVHEGVVTSGEPLPAPVAVAAKPAAQAEELPEVAESFGDKWDPNGSQTLD
DRLTLIVAESMGYAPEDLPAEIPLIELGLDSLMAVRIKNRVEYEFDIPQLQLSAVKDASL
RDVAKYLRYAVENREEVAQLAEQQAAEKAAERAAAAEQDDLPEVEDTTAVGEAEQILAEA
EAQTAPGTTEPEQESSGVDVPPRDAAERLTFASWAVVTGKSAKGIFNPLPKLERDVAEKL
AARLTERAEGEITVDDVLAAPTIEQLAETVRQHLESADRIDGLVRTLRPRVEGSDTVPVF
VFHPAGGSTVAYEPLLRRLPAHTPVFGFERTEGPIDTRAQAYLPLIKEIQGDGPYVLCGW
SLGGVLAYAVARLLREEGKDVRLVGLIDTVMAGEKVEDTPDEIRKRWQRYSAFAKKTYGI
DAPLPYDLLAEAGSDEEQIGILMGLLELSGAQIPGGIIEHQRTSWLDNRAIQTAELLPYD
GKVVLYMADKYHDDAIDLEPAFGTRQPDGGWGEVVADLEVVHVGGDHLQIVDEPYISKVG
EDLTRKLADIEASRS
NT seq
4908 nt
NT seq
+upstream
nt +downstream
nt
atgacggttgcgcagctgcgcgaatggctgcgcaactggatcgccgacgcgaccgggcag
ccggtctcccagatctcggacgatcgtccgatggaggagttcggactgtcctcccgggac
gccgtcgccatggcgggcgagatcgaggaactcctcggtgtcacgctgaacgcgacgatc
gcctaccagcacccgacgatcgcatcgctcgcgacgcgcatcatcgaaggtgaacccgag
gcacctgccgaggacgactccgccctgtacacggtcggtgccgtggcgggttcgaaggac
gtcgccatcgtcggtctgtccacccgtttcccgggtcacgtcgacactccggaacagatg
tgggatctgctcgcgtccggacgcgacggcatctccgatctgcccgagggccgctggtcg
gagttcgagaacgaccccgccgtgtgggagtcgatccgcaacgccaacaccaagggcggc
tacctcgacgacgtcaagggcttcgacgccgagttcttcgcgatgtcgccgcgcgaggtc
gagatggtcgacccgcagcagcgcctcgcactggagctgacctgggaagcgctcgagcac
gcgcacatcccgccgagcgagctcaagggcggctcggtcggtgtgttcatcggcagctcg
gcgagcgactacatgctcctcgcggtcggcgacccgtccgcagcgcatccgtacgcgctc
accggcacctccaccgcggtcatcgccaaccgcgtgtcgtacttctacgacttccacggc
ccgtcggtcacgctcgacacggcgtgctcgtcgtcgctggtcgccgtgcatcaggccgtg
cgcgcgctgcgcaacggtgaggccgacgtcgccctcgccggtggcgtcaacatgttgctc
gccccggccggcaccctcggcttcgacgaactcggcgtcatggcacccgacggccgcatc
aaggcgttctccgccgacgccgacggcatgatccgcgccgagggcggcggtctcgtcgtg
ctcaagcgtctcgaggacgccgagcgcgacggcgacaacatcctcgcggtcatcgccggt
tcggccgtcaaccaggacggtcgctccaacggtctggccgctcccaaccccgaagcgcag
gtcgacgtgctgcgccgcgcctaccgcgacgcgcagatcctgccgtccggtgtcgactac
atcgaggcgcacggcaccggcacggtactcggcgacccgatcgaggccgatgcgctcggc
cgtgtcatcggtcgtggccgcgaggacgacaagccggtcctgctcggttcggccaagacc
aacttcggtcatctcgagtccgccgccggtgcggccggtctcatcaaggtcgttctcgcg
atgcagaacgatcagcttccgccgacgctcaactacaccgcccccaacccgtacattccg
ttcgacagcgcgcacctgaaggtcatccccgagggtgcgaagtggccgcgctacaccggt
cgcgccgtcgccggcgtgtccggattcggtttcggtggcaccaacgcgcacgtcgtggtc
cacgagtacaccggcccggagggccaggaggccgccgaggccgaggtcgaggtcctgccg
gaggagatccccgccgccgcggagaccaccgagcaggcccgcgagctgcccgtcctgctc
gccgtctccgctgcgatgccgtcacgtcgccgccgtgccgctgccgatctcgccgactgg
ctcgagaccgagaagggcagcacgacgccgctcgccgacgtcgcccgcacgctctcccgt
cgcaaccacggccggtcccgcgcgatcgtcgtggcgagcaaccacggcgaggccatcgcc
ggtctgcgtgccgtcgccgccggcaagcccgcgcagggcgtgttcaacgccgacgctccc
gcctccaagggcgcggtgtgggtgctgtccggcttcggtgcccagcaccgcaagatggcc
aagcagctgtacctggagaacccggtcttcgcggcggccgtcgacgaggtcgacgagctg
atctacgacgagtcgggctactccatgaaggagaagttcctcgacgacgcgcaggactac
gacgtcgagaccgcgcaggtcggaatcttcacgatccagatcggtctcgccgcgctgctg
cgtcaccacggtgccgagcccgccgcggtcgtcggccactcgatgggtgaggccgccggc
gcctacatctcgggcggactgtcgctcgaggacgccgtgcgcgtgatctgctcgcgctcg
cgtctgatgggtgaggccgaatccggcctgaccggcgacgacatccgcctcatggcgctc
gtcgagtacagcgccgccgagatcaccgacgtgctgcccgacttcccgcagctcgaggtc
tgcgtctacgcggcgcccacacacaccgtcatcggtggcccgcaggagcaggtcaacgcg
atcgtggcgcgcgccgaggccgaggagaagttcgcccgggtcctgcagaccaagggcgcg
agccacacctcgcaggtcgatccgatcctcggcgagctcgcggccgaactcgccggcatc
gaaccgcatcgcctgaaggtcgacctgtactcgtcggtcgaccaggagaccctctaccgc
gcaggccacgacggcatccacgacgtcgagtactggaccaagggcatgcgccacagcgtg
tacttcacgcaggcgatccggcaggccctgtccgacggccacaccaccttcgtcgagctc
aacgccaaccccgcgacgctcatgtcggtcgcggcgacggccttcgacgccggtgtgcag
gacggccagttcatccagacgctcaagcgcaaggaggacgagtccctcggcgtgctggcc
gcgctcgcgcagctgtacgtgcacgggcagtccgtcgacctgaagacgttgctgccggaa
ggcgactacgccgacctgccgcgcaccgccttcctccgcaagccgtactgggtcgacgcc
agcatcggcacgtccggcaacggccgcgtgcccggcgcccgggtcgccctgcccgacggc
cgctacgtgtgggaggtgcaggcatccgccgtcaccgatgcggccgagctggtcgtcgcg
gcggcctcgcaggtgctgtccgatgtcacgctcaccgcgtccatcccgcacaccgacgtc
cccgcgaccggcaccctcaccacgacgctcacccggcacccgggtggcgcgtcgctgcag
gtgcacgcgaacaccggcgacggtttcacgctcgtccacgagggtgtcgtcacctccggt
gagccgctgcccgcgcccgtcgcggtggccgcgaagccggccgcgcaggccgaggagctg
cccgaggtcgccgagtcgttcggcgacaaatgggatccgaacggatcgcagaccctcgac
gatcgcctgacgctgatcgtcgccgaatccatgggctacgcgcccgaggacctgccggcc
gagatcccgctcatcgagctgggcctcgactcgctcatggccgtccgaatcaagaaccgc
gtcgagtacgagttcgacattccgcagctgcagctgtcggcggtcaaggacgcgagcctc
cgcgacgtcgcgaagtacctgcggtacgccgtcgagaaccgcgaggaggtcgcgcagctc
gccgagcagcaggccgccgagaaggcagccgaacgcgccgccgctgcggaacaggacgat
ctgcccgaggtcgaggacaccaccgcggtgggcgaggccgagcagatcctcgccgaagcc
gaggcacagaccgcgcccgggacgaccgagcccgaacaggagtcgagcggagtcgacgtg
ccgccgcgcgacgccgcggaacggttgaccttcgcctcctgggccgtggtcacgggcaag
tcggccaagggcatcttcaacccgctgccgaagctcgagcgtgatgtcgccgagaagctc
gcggcacggctgaccgagcgggccgagggcgagatcaccgtcgacgacgtgctcgccgcc
ccgaccatcgagcagctcgccgagacggtccgtcagcatctcgaatccgccgatcgcatc
gacggactcgtgcgcacactgcggccccgcgtcgagggatcggacaccgtgccggtcttc
gtcttccaccctgcgggtggttcgacggtcgcgtacgagccgctgctgcgccgccttccg
gcgcacaccccggtgttcggtttcgagcgcaccgagggcccgatcgacacccgcgcccag
gcgtacctgccgctcatcaaggagatccagggcgacggcccgtacgtgctgtgcggctgg
tcgctcggcggtgtcctggcctacgcggtggcccgtctgctccgcgaggagggcaaggac
gtgcgtctcgtcggcctcatcgacaccgtcatggccggtgagaaggtcgaggacacgccc
gacgagatccgcaagcgctggcagcgttactcggcgttcgcgaagaagacctacgggatc
gacgcgccgctgccctacgacctgctggccgaggccggcagcgacgaggagcagatcggc
atcctgatgggtctgctggagctgagcggggcacagatccccggcggcatcatcgagcac
cagcgcacgtcgtggctcgacaaccgcgccatccagaccgcggaactgctgccctacgac
ggcaaggtcgtgctgtacatggccgacaagtatcacgacgacgcgatcgatctcgagccg
gccttcggtacccggcagcccgacggtgggtggggcgaggtcgtcgcggatctcgaggtc
gtgcacgtcggcggcgatcacctgcagatcgtcgacgagccgtacatctcgaaggtgggg
gaagacctgacccgcaagctggccgacatcgaggcctcgaggagctga
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