Rhodococcus sp. PD04: U9J23_04970
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Entry
U9J23_04970 CDS
T11027
Name
(GenBank) DNA-formamidopyrimidine glycosylase family protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rhpd Rhodococcus sp. PD04
Pathway
rhpd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rhpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
U9J23_04970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhpd03400
]
U9J23_04970
Enzymes [BR:
rhpd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
U9J23_04970
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
U9J23_04970
DNA repair and recombination proteins [BR:
rhpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
U9J23_04970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_TFIIB
NFACT_N
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
WSE23660
LinkDB
All DBs
Position
complement(1052483..1053349)
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AA seq
288 aa
AA seq
DB search
MPELPEVEALVVFLREHAVGSVVGRIDVAALSVLQTADPPITALQGRDITGASRFGKFLA
IDCSGLHLITHLSRAGWLRWLDEPSQAPPKLGRGPLALRVHLFAPDATTPAFDLTEAGTK
KRLAVWVVDDPQTVPGIARLGPDALALTRDEFAALLTDSTSRLKTLLTDQKVLAGIGNAY
SDEILHVAQQSPFATAGKLTDDEVTALYGSMRSVLTDAVTRSVGQDAARLKGEKRSGLRV
HGRTGEPCPVCGDTVREVSYTDRSFQYCPTCQTGGKVLADRRMSRLLK
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagctccccgaagtggaagcacttgtggtgttcctgcgcgagcacgcggtcggc
agcgtcgtcggacgcatcgacgtcgcggcgctgagcgtgctgcagacggccgacccgccg
atcacggcgctgcagggacgcgacatcaccggagcttcgcgcttcggcaagttcctcgcg
atcgactgttcggggctgcatctgatcacccacctgtcgcgggcaggctggttgcgctgg
ctcgacgaaccgtcgcaggctcccccgaaactcggtcgcggtccgcttgcgctccgcgtg
catctgttcgcccccgacgcgacgacaccggccttcgatctcaccgaggccggtacgaag
aagcgcctggcggtctgggtcgtcgacgatccgcagacggtgcccggcatcgcccgcctc
ggccccgacgcgctcgcgctcacccgggacgagttcgccgcgctcctgaccgacagcacc
tcgcgtctcaagacgctgctcaccgatcagaaggttctcgcgggcatcggcaacgcctac
tccgacgagatcctgcacgtcgcgcagcagtcgccgttcgcgacagccggcaagctcacc
gacgacgaggtgaccgccctgtacgggtcgatgcggtcggtactgaccgacgccgtcacc
cgctcggtcgggcaggacgcggcgcgcctcaagggcgagaaacggtcgggactgcgcgtg
cacgggcgtaccggcgagccgtgcccggtgtgcggcgacaccgtccgagaggtctcctac
accgaccgttcgttccagtactgccccacctgccagaccggagggaaggtcctcgccgac
cggcggatgtcccgcctgctgaagtag
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