Rhodococcus sp. PD04: U9J23_05045
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Entry
U9J23_05045 CDS
T11027
Symbol
pcrA
Name
(GenBank) DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhpd Rhodococcus sp. PD04
Pathway
rhpd03420
Nucleotide excision repair
rhpd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
U9J23_05045 (pcrA)
03430 Mismatch repair
U9J23_05045 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhpd03400
]
U9J23_05045 (pcrA)
Enzymes [BR:
rhpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U9J23_05045 (pcrA)
DNA repair and recombination proteins [BR:
rhpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
U9J23_05045 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
U9J23_05045 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
OstA_2
DEAD
AAA_22
ResIII
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WSE23673
LinkDB
All DBs
Position
1068409..1070787
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AA seq
792 aa
AA seq
DB search
MNTPVALANSHPGSDALLEGLNPQQREAVTHEGAPLLIVAGAGSGKTAVLTRRIAYLLAE
RGVVPGQVLAITFTNKAAAEMRERVAALVGPRANAMWVSTFHSSCVRILRAQAGLLQGMN
SNFTIYDADDSRRLLTMIAKDLELDSKKYSARLLSTQISNLKNELIGPEEAAHEAETDSA
ATELTRVVARVYAHYQQRLRTANAFDFDDLIGETVALLQAHPQVAEYYRRRFRHVLVDEY
QDTNHAQYVLVRTLVGDPEEESAVPPSELCVVGDADQSIYAFRGATIRNIEEFERDYPQA
RTILLEQNYRSTQNILSAANSVISKNTGRREKRLWTDSGEGELITGYVADNEHDEARFVA
AEIDRLVDGGATTYSDIAVFYRTNNASRAFEDVFIRHGVPYKVVGGVRFYERKEVRDIVA
YLKVLDNPDDTVSLRRILNTPRRGIGDRAEACVAVHAERLGVGFGQALADAAVGKVALLN
TRAQKAIAGFVEMMDDLRAMLVASDADGNDTADIGDIVEAILERTGYSAELSASDDPQDG
ARLDNLHELVSVAREFSADVRNAAGIVDDVREEGDPEPGSLAAFLEKVSLVADADQIPEN
EAGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDPAELSEERRLAYVGITRARRR
LYLTRAVLRSSWGQPLTNPESRFLQEIPQHLIDWRRLEPTPARGQAIGSGTGSRFGAGER
RGSSGTPSFGAARGRNNQLVLDVGDRVSHDKYGLGTVLETRGSGPTATVVIDFGSAGKVR
LMLVGGVPMIKL
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgaacactcccgtcgcgctcgcaaactcccacccaggatccgatgctcttctcgaaggg
ctcaatccgcagcagcgggaagcggtcacgcacgaaggggccccgctgctgatcgtcgcg
ggcgcgggctccggcaagactgcggtgctcacccgtcgtatcgcctatctgctggccgag
cgcggcgtcgtccctggtcaggtgctcgccatcacgttcaccaacaaggccgcggccgag
atgcgtgagcgggtggcggccctggtggggccgcgcgcgaatgcgatgtgggtctcgacc
ttccactcgagctgcgtccggatcctgcgcgcgcaggcgggtctgctgcagggcatgaat
tcgaatttcacgatctacgacgccgacgattcccgtcgtctgctcacgatgatcgcgaag
gatctcgaactcgacagcaagaagtactccgccaggctgctgtccacgcagatctcgaac
ctgaagaacgaactgatcgggcccgaggaggccgcccacgaggcggagaccgattcggcg
gccaccgaactcacccgcgtcgtcgcccgggtctacgcgcactaccagcagcgcctgcgc
acggcgaatgccttcgacttcgacgacctcatcggcgagacggtggcgctgctgcaggcg
catccgcaggtcgccgagtactaccggcgccggttccgccacgtgctggtcgacgagtac
caggacaccaaccatgcgcagtacgtgctggtgcgcaccctcgtgggtgatcccgaggag
gagtccgccgtccccccaagcgaactgtgcgtggtgggcgacgccgaccagtcgatctac
gccttccgcggcgccacgatccgcaacatcgaggagttcgagcgcgactatccgcaggcg
cgcacgatcctgctcgagcagaactatcgctccacccagaacattctgtcggcggcgaat
tccgtcatctccaagaacacggggcgccgcgagaagcggctgtggaccgattcgggcgag
ggtgaactcatcaccggctacgtcgccgacaacgagcacgacgaggcgcggttcgtcgcc
gccgagatcgatcggctcgtcgacggcggcgccaccacctactccgacatcgcggtgttc
taccgcaccaacaatgcttcccgcgcgttcgaggatgtcttcatccggcacggtgtgccc
tacaaggtcgtcggcggtgtgaggttctacgagcgcaaggaggtgcgcgacatcgtcgcg
tacctgaaagtgctcgacaatcccgacgacacggtgagcctgcgccgcattctgaacacc
cctcgccgcggtatcggcgatcgcgccgaagcgtgcgtggcggtgcacgccgagcggctc
ggtgtcggcttcgggcaggccctcgccgacgccgcagtcggcaaggtcgcgctgctgaac
acgcgggcgcagaaggcgatcgccggtttcgtcgagatgatggacgacctgcgggcgatg
ctcgtcgcgagcgacgccgacggcaacgacacggccgacatcggcgacatcgtcgaggcg
atcctcgaacgcaccgggtacagcgcagagctgtcggcgagcgacgatccgcaggacggc
gcccgtctcgacaacctccacgaactcgtcagcgtggcaagagaattcagcgccgacgtg
cgcaacgcggccgggatcgtcgacgacgtacgcgaagagggcgatcccgaaccgggatcg
ctcgcggccttcctcgagaaggtctcgctcgtcgccgacgccgaccagatcccggagaac
gaggccggtgtggtcacgctgatgacgttgcacaccgcgaagggcctcgagttccccgtc
gtcttcgtcaccggttgggaggacggccagttcccgcacatgcgtgccctgggcgatccg
gccgagctgtccgaggaacggcgactcgcgtacgtcggcatcacccgagcccggcgtcgt
ctctacctcacgcgcgccgtgctgcggtcgtcctggggacagcccctcaccaatccggaa
tcccgcttcctgcaggagattccgcagcatctcatcgactggcgacgcctcgagcccaca
cccgcgcgcgggcaggcgatcggctcgggcaccggttcacggttcggtgcgggcgagcgg
cgcggttcgtcgggcacgccgagtttcggtgcggcgcgcggacgcaacaaccagttggtg
ctcgacgtcggcgatcgcgtcagccacgacaagtacggtctgggaacggttctcgaaacc
cggggctcgggccccacggccaccgtcgtgatcgacttcggcagcgccggcaaggtgcgg
ctgatgctcgtcggcggtgtgccgatgatcaagctgtga
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