Rhodococcus sp. PD04: U9J23_05905
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Entry
U9J23_05905 CDS
T11027
Name
(GenBank) SMC family ATPase
KO
K03546
DNA repair protein SbcC/Rad50
Organism
rhpd Rhodococcus sp. PD04
Brite
KEGG Orthology (KO) [BR:
rhpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhpd03400
]
U9J23_05905
DNA repair and recombination proteins [BR:
rhpd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
U9J23_05905
Archaeal homologous recombinant proteins
U9J23_05905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_27
SMC_N
AAA_29
AAA_15
DotD
Motif
Other DBs
NCBI-ProteinID:
WSE23831
LinkDB
All DBs
Position
1265986..1268964
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AA seq
992 aa
AA seq
DB search
MRLHHLEITAFGPFADTVEIDFDELGADGLFLLHGQTGAGKTSILDAVAFALYGTVPGAR
SEGRRLLSDHARVGAVPTVRLEATIAGRRLAIERSPEFERPKKRGTGTIKQQAKANLTWL
DGSGENLSRAQEIGDVVKSLLGMSAEQFFQVVLLPQGDFARFLRANSEERGRLLERLFDT
TRFGDVEQWFRDRRGAGTKLLAEQQKKVEVLAAKVAASAGIEAGADADPVEWAGRLLAEA
AENRDDAAAALARVRAVDEANRRRLDETVALADRLRRRRDALNILAELEQTQTQRVAVTA
ERDAAHRAVSVAVVDREAARLAREADAAVARAETAAAPLRNDDEGRELLGAVGPTPSAAD
RDIIRPRCEEWSSEAARLDVLLDRRRRLTELENEREKFAGRRRALTDERRQVIDERAALP
ERSTAAADAVAEAERAAAMLPGLSTARDRAADALDAATELASRRTELERLEARVLQLHSE
FNDARDAHLDVRQRRIDGMAAELAARLTDGEPCVVCGSTEHPEPARPAPDTATKADEERA
HAAEQRAATALSEAREAVTELSGIVAVLRQRCGDAELAELTTAHAEAVRAHDEAATVVGR
LDHLRAAVEDLRKLDTVLAEQEKRLDAELSELAREDAVRAAEITEIRERIVEAVGDLDLL
APRRKTVAALSAAATALLDARTAALQARTAADERAADARTAAAEAGFTDLESARAAVRTP
ERLAEIDRVLRAADDERAVATSTLNDPAIAALTGDEVADVTAARAVVDDGAAAVEAALSA
ATEAERRHLDIENYTRRLERACAELAPLLDEHAELSALADVVAGMGSNAKKMSLRSYVLA
ARLEEVADAASERLRRMSGGRYEFVHSDAAEIRGRRGGLGLDIHDEYTGAVRSTKTLSGG
ESFQASLALALGLADVVAAEAGGLVLDTMFIDEGFGSLDADSLEAVMGVLDELRAGGRVV
GVVSHVDEMRQRIPSRLHVIRGRSGSTVRVAS
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgagactgcaccacctcgagatcactgctttcggtccgttcgccgacaccgtcgagatc
gacttcgacgagctcggcgccgacgggttgttcctactgcacgggcagacgggcgcgggc
aagacgtcgatcctcgacgcggtcgcgttcgcgctctacggcaccgtccccggtgctcgc
tccgagggacgccggttgctgtccgaccacgcacgggtgggtgccgtgccgacggtccgg
ctcgaggcgaccatcgcgggtcgccgtctggccatcgaacgcagccccgaattcgaacgc
ccgaagaagcgcggcaccggcacgatcaagcagcaggccaaggcgaatctcacctggctc
gacgggtcgggggagaacctgtcccgcgcccaggagatcggcgacgtcgtcaagtcgctg
ctcgggatgagcgccgaacagttcttccaggtggtgctccttccgcagggcgacttcgcc
cggttcctgcgcgcgaacagcgaggagcgcggcaggctgctcgagcgtctgttcgacacc
acccgtttcggcgacgtcgagcagtggttccgcgatcgtcgcggtgccggaacgaaactg
cttgccgagcaacagaagaaggtcgaggtcctcgcggcgaaggtagccgcgtccgccggg
atcgaggcgggcgccgacgccgatccggtggaatgggcgggccgcctgctcgccgaggcc
gccgagaaccgcgacgatgccgccgcagcgctcgcacgagtccgggccgtcgacgaggcc
aaccggcgcaggctcgacgagaccgtcgctctcgccgaccgactccgccgccgccgcgac
gccctgaacatcctcgccgaactcgagcagacgcagacgcagcgcgtcgccgtgacagcc
gaacgcgacgccgcgcatcgcgcggtgagcgtcgcggtcgtcgatcgggaggccgcccgc
ctcgcgcgcgaggccgatgccgccgtggcgcgcgccgagacggccgccgcgccgctccgc
aacgacgacgaaggacgcgaactcctcggggctgtcgggccgacgccgtccgccgccgac
cgcgacatcatccgacctcgatgcgaggaatggtcctcggaggcagcgcgactcgacgtc
ctactcgatcgccgtcgtcgtctcaccgagctcgagaacgaacgcgagaagttcgccgga
cgtcgccgtgccctcaccgacgagcgtcggcaggtgatcgacgagcgcgccgcgctgccc
gaacgatcgaccgccgctgctgatgcggtcgccgaggccgaacgcgcagccgcgatgctt
cccgggctctccaccgcgcgcgaccgcgccgccgacgcgctcgacgccgccaccgaactg
gcttcgcgccgaaccgaactcgaaaggctcgaagctcgggtactgcaactgcactccgaa
ttcaacgacgcgcgcgacgcgcacctcgacgtccggcagcgccggatcgacggaatggca
gccgaactcgccgcgcgtctcaccgacggcgaaccgtgcgtggtctgcggttccaccgaa
catcccgagcccgcgcgcccggctcccgacactgcgacgaaggcagacgaggaacgcgcc
cacgccgccgagcaacgcgccgccaccgcgctgagcgaagcacgcgaggccgtcaccgaa
ctctccgggatcgtcgccgtcctccgacagcgttgcggcgacgccgaactcgccgaactc
accaccgcccacgccgaggcggtccgcgcccacgacgaggccgccaccgtcgtcggccgg
ctcgaccacctgcgcgcggcggtcgaggacctgcgcaaactcgacacggtgttggccgaa
caggagaagcggctcgacgccgaactgtccgagctcgcccgcgaggacgcggtccgtgcc
gccgagatcacggagatccgcgagcgcatcgtcgaggccgtcggcgacctcgatctgctc
gccccgcgacggaagacggtcgcggcgctgtccgccgcggccaccgcgctgctcgatgct
cgcaccgcagccctccaggcccgcacggccgccgacgaacgcgccgccgacgcccgcacc
gcggccgccgaggcaggcttcaccgatctcgaaagcgcccgcgccgccgtccggacgccc
gagcgactcgccgagatcgaccgcgtcctgcgcgccgccgacgacgaacgcgcggtggcc
acctccacgctgaacgacccggcgatcgcggctctcaccggcgacgaggtcgccgacgtg
acggccgcgcgcgcagtggtggacgacggtgccgccgcggtcgaggcagccctgagcgcg
gccaccgaggccgagcgccggcacctcgacatcgagaactacacccggcgactcgagcgt
gcctgcgccgaacttgccccgttgctcgacgaacacgccgaactctccgcactcgccgac
gtcgtcgccgggatggggtcgaacgccaagaagatgtcgctgcgctcgtacgtgctcgcg
gcgcgactcgaggaggtcgccgacgcggcctccgaacgcctgcgcaggatgtccggcggt
cgctacgagttcgtgcactccgacgcggccgagatccggggtcgtcgcggcggtctcggc
ctcgacatccacgacgagtacaccggcgccgtgcgatcgacgaagacactgtcgggtggc
gagtccttccaggcgtccctcgcgctcgccctcggcctcgccgacgtcgtcgccgccgag
gccggtgggctcgtgctcgacacgatgttcatcgacgaagggttcggctcactcgacgcc
gactccctcgaagcggtcatgggtgtgctcgacgaactgcgcgcgggaggccgtgtggtg
ggcgtggtcagtcacgtcgacgagatgcggcagcggatcccgagcaggctgcacgtcatc
cgtggccgctcgggatccaccgtccgcgtcgcgagctga
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