Rhodococcus sp. PD04: U9J23_08250
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Entry
U9J23_08250 CDS
T11027
Name
(GenBank) DEAD/DEAH box helicase
Organism
rhpd Rhodococcus sp. PD04
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
DUF3670
Helicase_C
ResIII
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
WSE24271
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Position
1789919..1792726
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AA seq
935 aa
AA seq
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MLHGLWSPGSGLMLWWDPAAEPDPDALPSALRRWIDRPFRHRVTLTLPTDTEPSTLPAVA
VAPADAAELLLDMPRRPGGVGGDLRYLAHVARGIERWAQAGRVAPELVRVEKQWWARWRL
LGGEKTRAWSAELAAAMSPAQRQLGRPVDLLDDLCRELTDPIVRTLHGSSTSLHPLVAAL
AEGSPHPRGTQRMADALEEWRASLAGYEPDLVLRLVEPDDADDAVGADSVWRLEVCLRPE
GQSPTPLPVEDTDPHLLQIGVRKLGIALQAYPRLQDVPRDPDSLDLLLPTPVVVDLVEHG
ARELEAAGIAVLLPRAWTRVDPSLRLQVDSPVAPVSADDSVVGMSAIVSYEWQLAVGDML
LTQSEMEELVAANSDLVKLRGKWVRADAEALARAARYVTAHSAEDATLGSLFAQFTGDDA
PPAEVTEISASGWVEMLLDGQAHPESVPVPAGLNAELRPYQQRGLDWLAFMSRLGLGAVL
ADDMGLGKTIQVLALLAHERESGLRKAPTLLVCPMSVVGNWQREAERFVPDLRVHVHHGA
QRLSGPALAAAAADHDLVVTTYAIAARDVAQLATLTWQRVVLDEAQHVKNTATAQSRATR
AVPAAHRIALTGTPVENRLEELRAILDFANPSLLGSAASFRARFAVPIERDHDAVAAARL
RALSAPFVMRRVKTDPDVISDLPEKFEQTVRANLTAEQAALYRAVVDDMMRRIRDKEGMA
RKGAVLAALTRLKQVCNHPAHYLSDGSPVLRRGRHRSGKLGLVEDIVESVLADGEKVLLF
TQFREFGELVVPYLEERFATTVPFLHGGVSKSRRDAMVAGFQGEGGPPIMVLSLKAGGTG
LNLTAANHVVHLDRWWNPAVENQATDRAFRIGQRRDVQVRKLVCVGTVEERIDEMLTGKQ
ELAEIVVGAGENWITELSTDQLQSLLTLGDDAVGD
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgttgcacgggctgtggtcaccgggatccggcctgatgctgtggtgggaccccgccgca
gagcccgatcccgacgcgctgccgtctgcgctgcgccggtggatcgaccgcccgttccgc
catcgcgtcaccctcaccctccccacggacaccgagccgagcacgctgcccgccgtcgcg
gtcgcaccggcggacgcagccgagctcctgctcgacatgccgcgccgtcccgggggcgtc
ggcggcgacctgcgatatctcgcgcacgtcgcccgcggcatcgagaggtgggcgcaggcc
ggccgcgtcgcaccggaactcgtgcgtgtcgagaagcagtggtgggcgcggtggcgcctg
ctcggtggtgagaagacgcgggcgtggtccgccgaactcgcggcggcgatgtcgcctgcg
cagcgacagctcggacgacccgtcgatctcctcgacgatctgtgccgcgaactgaccgat
ccgatcgtgcgcaccctccacggctcgtcgacctcgctgcacccgctcgtcgccgcactg
gccgagggcagcccccacccccgcgggacccagcgcatggccgacgcgctcgaggaatgg
cgtgccagcctcgccggatacgaacccgacctcgtgctgcgcctcgtcgagccggacgac
gccgacgacgcggtcggagccgactccgtctggcggctcgaggtgtgcctgcgtccggag
ggacagtccccgacgccgctgcccgtcgaggacaccgaccctcatctgctccagatcggc
gtgcgcaagctcgggatcgcactccaggcctatccccgtctgcaggacgtgccccgcgac
cccgacagtctcgacctgctgctgcccaccccggtcgtcgtcgacctcgtcgagcacggc
gcccgcgaactcgaggccgcgggcatcgccgtgttgctgccgcgtgcttggacccgggtc
gatccgtccctgcgtctgcaggtcgactcgcccgtcgcccccgtgagcgccgacgacagc
gtcgtcgggatgagcgcgatcgtctcgtacgaatggcagctcgccgtcggcgacatgctg
ctcacccagtcggagatggaagagctcgtcgcggccaacagcgacctggtcaagctgcgc
ggcaagtgggtccgggccgacgccgaggcgctggcccgcgcggcccggtacgtcacggcg
cattccgccgaggatgcgaccctcgggtcgttgttcgcccagttcaccggcgacgatgcg
ccgcccgcggaggtcaccgagatctccgcgtccggctgggtcgagatgctgctcgacggg
caggcccaccccgagtccgtccccgtgccggcgggactgaacgccgaactgcgtccctac
cagcagcgcggcctcgactggctcgcgttcatgagccggctcggcctcggcgccgtgctc
gccgacgacatgggcctgggcaagaccatccaggtcctcgcgctgctcgcccacgaacgc
gagtcggggctgcggaaggcgccgacactgctcgtctgcccgatgtccgtggtgggcaac
tggcagcgcgaggccgaacggttcgtgcccgacctgcgggtgcacgtccaccacggtgcc
cagcggctgagcgggccggcactcgccgccgctgcggccgaccacgatctcgtggtgacg
acctacgccatcgccgcccgggacgtcgcgcagcttgcgaccctgacctggcaacgcgtg
gtcctcgacgaggcccagcacgtgaagaacaccgcgacggcgcagtcccgtgccacgcgc
gccgtgcccgccgcgcaccggatcgcgctcaccggtacaccggtggagaaccgtctcgag
gaactgcgcgcgatcctggacttcgcgaatccgtccctgctcggcagtgcggcatccttc
cgtgcccggttcgcggtgccgatcgagcgcgaccacgacgccgtcgccgcggcgcggttg
cgggcactgtccgcaccgttcgtgatgcgccgcgtcaagaccgatcccgacgtgatctcc
gatctgcccgagaagttcgagcagaccgtgcgcgccaacctcacggccgagcaggccgcc
ctctaccgggccgtggtggacgacatgatgcgccggatccgcgacaaggagggcatggcc
cgcaagggtgcggtgctcgcggcgctgacccggctaaagcaggtgtgcaaccatccggcg
cactatctgagcgacggctcgcccgtcctgcgtcgcggacggcaccgctcgggcaagctc
ggtctggtcgaggacatcgtcgagtcggtactggccgacggcgagaaggtgttgctgttc
acgcagttccgcgagttcggtgagctcgtcgtcccctatctcgaggagcggttcgcgacg
acggtgcccttcctgcacgggggagtgtccaagagccgtcgcgacgcgatggtcgccggc
ttccagggagagggcggcccgccgatcatggtgctctcgctcaaggcgggcggtaccgga
ctgaacctcaccgccgccaaccacgtcgtgcatctcgaccgatggtggaatccggcggtg
gagaaccaggccaccgaccgcgcgttccggatcgggcagcgtcgcgacgtccaggtccga
aagctcgtctgtgtcggaacggtggaggagcgtatcgacgagatgctcaccggtaagcag
gaactggccgagatcgtggtcggggcgggggagaactggatcaccgagttgtccaccgac
cagctgcagagcctgctcacgctcggcgacgacgcggtgggggactag
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