Rhodococcus sp. PD04: U9J23_09310
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Entry
U9J23_09310 CDS
T11027
Name
(GenBank) translation initiation factor IF-2 N-terminal domain-containing protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhpd Rhodococcus sp. PD04
Pathway
rhpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U9J23_09310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhpd03019
]
U9J23_09310
03009 Ribosome biogenesis [BR:
rhpd03009
]
U9J23_09310
Enzymes [BR:
rhpd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
U9J23_09310
Messenger RNA biogenesis [BR:
rhpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
U9J23_09310
Ribosome biogenesis [BR:
rhpd03009
]
Prokaryotic type
rRNA processing factors
U9J23_09310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WSE25077
LinkDB
All DBs
Position
2018482..2021748
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AA seq
1088 aa
AA seq
DB search
MEASDAGGRNLLGLPAKIRVHALAKLLGLTSKQVIAKAAERGTELRSAHSTLPRDVAEDL
HAALSDDTGTPEPAVQQAGTAPETAEQTAPEVETAPEPVAEKAAESTEALPVESDDLRPA
EKTADETAPQALDIPSVGGPTGLFTSVEQSTPLFEMPEPSTTAEPIVAAPLFLQPEVPSP
AEEEETRPRRRRARRGKDTEQTPVEDEQQTAEPAAAESTEEAPSQQADEDQDDQPRRRRR
GRRGRGRGRGDGTDTDQQDETTASGEDSESSDAETDKSAAAESTAAETPAEETAGAEEST
SDEAASGDDQSSDEHDSDDEQGGGTSRRRRRRRRRRGSSDTDTASTDDDSVPTVVHEREP
RPKSRAKDEVQGISGSTRLEAKRQRRRDGREAGRRRPPILTESEFLARREAVDRVMVVRE
RTGGSHAGMTQVAVLEDGILVEHFVTTSGSASMVGNIYLGRVQNVLPSMEAAFIDIGRGR
NGVLYAGEVNWEAAGLGGNSRKIEQALKPGDQVVVQVSKDPVGHKGARLTTQISLAGRFL
VYVPGGSSTGISRKLPDTERKRLKDILREIVPSEAGVIIRTAAEGVSEEELSRDVTRLQT
QWEAIREQSEKLQADASGQPKTLYEEPDLLVKVVRDLFNEDFSKLVIEGDSAWNTVESYI
RTVAPDLLPRVERYRSENSVDVFGAHRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVID
VNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRR
LTEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLVEAFSTTCEHCNGRGLIVHSEPIESK
SSDDSGRSSGGGSRRKRGRDKSSQEPAAETHTTPSPEEVVKRAAHPVALAMAAHHSTPAA
DAPAAEPTATETASEAASAPAGDVDPVKVTEPLRAVEPEKVAAPTKEPVAGEDATTVTTA
SDEPAEIEAEVAAAESAVADTAVSEAPVAETAVSGAGESTDGAASVEAAEPAPRRRARRV
ARAAAAPAGDGGPAAKVFVVPATTGTSTGTEPDSRPSTPVETPVEIVRRPRSRRAAGRPA
GPPVDAEA
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atcgaagcgtcggacgcagggggacggaacctcctcggtctgcctgccaagatccgcgtc
catgccctcgccaagttgctggggctgaccagtaagcaggtgattgcgaaggccgccgag
cgcggcaccgagctgcgcagtgcgcactcgacccttccgcgcgacgtcgcggaggacctg
cacgccgcgttgagcgacgacacgggcacgcccgagcctgccgtgcagcaagccggaact
gcgcccgaaactgcagagcagacggctcccgaggtcgagaccgcccccgagcctgtcgcg
gagaaggctgcggagagcaccgaggccctgccggtcgagagcgacgacttgcgacccgca
gagaagactgcggacgagactgcaccgcaggcactcgacatcccctccgtcggaggaccc
accgggctgttcacgtcggtggagcagagcacgccgctgttcgagatgcccgagccgtcc
accacggccgagccgatcgtcgccgcaccgctgttcctccagcccgaggtaccctcgccg
gccgaggaggaggagacccgcccgcgtcgacgtcgcgcacgccgcggcaaggacaccgag
cagactccggtcgaggacgagcagcagaccgccgagccggccgccgccgagtccaccgag
gaagcgccgtcgcagcaggcggacgaggaccaggacgaccagccgcgtcgccgccgccgc
ggacgtcgcggtcgtggacgtggccgcggggacggcacggacaccgatcagcaggacgag
accaccgcgagcggcgaggactccgagtcctccgacgcggagacggacaagtccgctgca
gcggagtccaccgccgcggagactcctgcggaggagaccgccggcgccgaggagagcacc
tccgacgaggccgcctcgggcgacgatcagagcagcgacgagcacgattccgacgacgag
cagggcggcgggacctcccgtcgccgtcgccgtcgccgtcgccgtcgcggttcctccgac
accgacaccgcgagcaccgacgacgactcggttcccacggtcgtccacgagcgggagccg
cgtcccaagagccgcgccaaggacgaggtccagggcatcagtggttcgacgcgtctcgag
gcgaagcgtcagcgtcggcgcgacggccgcgaggccggtcgccggcggcccccgatcctc
accgaatccgagttcctcgcccgtcgcgaggccgtcgaccgggtcatggtcgtgcgcgaa
cgcacgggcggttcccacgcgggcatgacgcaggttgcggtgctcgaggacggcatcctc
gtcgagcacttcgtcacgacctccggttcggcgtcgatggtcggcaacatctatctcggc
cgcgtgcagaacgtccttccgtccatggaggccgcgttcatcgacatcggccgtggccgc
aacggcgtgctctacgccggtgaggtgaactgggaggccgctggcctcggaggcaactcc
cgcaagatcgagcaggccctcaagcccggcgaccaggtggtcgtgcaggtcagcaaggac
ccggtcggtcacaagggtgcgcgtctgaccacccagatcagccttgccggacgcttcctg
gtgtacgtgccgggcggctcgtccacgggcatcagccgcaagctgcccgacaccgagcgc
aaacgcctcaaggacatcctccgcgagatcgtcccctccgaggcgggcgtgatcatccgt
accgccgccgagggcgtgagcgaggaggaactctcgcgcgacgtcacccgcctgcagacg
cagtgggaggcgatccgcgagcagtccgagaagctgcaggccgacgcatcgggacagccg
aagacgctctacgaggagccggatctgctcgtgaaggtcgtgcgcgacctgttcaacgag
gacttctccaagctcgtcatcgagggcgactcggcgtggaacaccgtcgagagctacatc
cggacggtcgcacccgacctgctgccgcgcgtcgagcgctaccgctcggagaactcggtg
gacgtcttcggtgcgcaccgcatcgacgagcagctcgcgaaggctctcgaccgcaaggtg
tggctgccgtccggtggcacgctcgtcatcgaccgcaccgaggcgatgactgtcatcgac
gtcaacaccggcaagttcaccgggtccggcggcaacctcgaggagacggtcacccgtaac
aacctcgaggcggccgaggagatcgtccgccagatgcgcctgcgcgacatcggcggcatg
atcgtcgtcgacttcatcgacatggtgctcgaatccaaccgcgacctcgtgctgcgtcgc
ctgaccgaggctctcggccgggaccgcacccgccaccaggtctcggaggtcacctcgctc
ggcctcgtccagatgacgcgcaagcggctcgggaccggtctcgtcgaggcgttctccacc
acctgtgagcactgcaacggccgcggcctcatcgtgcactcggagccgatcgagtcgaag
tcctcggacgactccggtcgttcgtccggcggcggttcgcggcgcaagcgtggacgcgac
aagagctcgcaggagcccgccgccgagacgcacacgacgccgtcgcccgaagaggtcgtc
aagcgtgccgcgcaccccgtcgcgctcgcgatggccgcgcaccactcgacaccggccgcg
gacgctccggccgcagagccgacagcgaccgagaccgcatccgaggcggcgtccgcacct
gcgggcgacgtcgacccggtcaaggtcaccgagccgctgcgggccgtcgagcccgagaag
gtcgccgcgccgacgaaggagcccgtcgcgggggaggacgccaccacggtgacgaccgcc
tccgacgagcccgccgagatcgaggcagaggtcgcagcggcggaatccgcggtcgccgac
acggccgtgtccgaggctcctgtggccgagacggccgtctccggagcaggggagagcacc
gacggtgcggcttccgtcgaggccgcagaaccggctccgcgtcgtcgggcacgcagggtc
gcccgggcggcggcagcgcccgccggggacggtgggcctgcagccaaggtgttcgtcgtc
cccgcgacgaccggcacctcgaccggaaccgagccggactcccggccgagcacaccggtc
gagacgccggtggagatcgtgcggcggccgcgttcgcggcgtgccgcagggcgccccgcc
ggacctccggtggacgccgaggcgtga
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