Rhodococcus sp. PD04: U9J23_10730
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Entry
U9J23_10730 CDS
T11027
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rhpd Rhodococcus sp. PD04
Pathway
rhpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U9J23_10730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhpd03019
]
U9J23_10730
03400 DNA repair and recombination proteins [BR:
rhpd03400
]
U9J23_10730
Enzymes [BR:
rhpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U9J23_10730
Messenger RNA biogenesis [BR:
rhpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U9J23_10730
DNA repair and recombination proteins [BR:
rhpd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
U9J23_10730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3553
Cas3-like_C_2
TniB
Motif
Other DBs
NCBI-ProteinID:
WSE24703
LinkDB
All DBs
Position
complement(2317145..2318905)
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AA seq
586 aa
AA seq
DB search
MQHNTYRPSSARASDDAREELCTAAQKVFGWDTLRPEQLDAMVPLLDGRDVLAVMATGSG
KSAIYQVPSLLLPGVTVVVSPLIALQNDQIAGLDHSEAPEAVAINSRQRESENEANWRAV
LEHDADYVFLAPEQLAKDEVLERLRSVEVSLLVVDEAHCVAMWGHDFRPEYLRLGDVAEA
LGRPPVVALTATASPPVREDIVEALRMRDPLVVAGGFDRPNLDIEVRRHTDDGEKRRAVV
EAVASLPGPGILYAATRKDTERYADALRERGIDACPYHAGMRAAEREDVHLGFLDGRCDV
VVATSAFGMGIDKPDVRFVVHASVPDSVDSYYQQIGRAGRDGEPATVLMFYRPEDLSLAT
FFTTHNPDEELIGRVFSAVRSASPMKLGRLRTELDVRGRRLSNAVNLLERCGALVSGRRG
LSATDIPRRQAIEQARETAASGERLDRSRVEMMRGYAETRGCRRRFLLGYFGETSADPCG
RCDTCRDGASDEVATVSVLPGTGAAQPDCETTEFIPNTRVVHTEWGPGVVMTCEHDRVTV
LFDSEGYRTLSLAAVAESGVLTVDDDHLPDEASTAALPAHMEEPVA
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
ttgcagcacaacacgtatcggccgtcgtccgcccgagcatcggacgatgcacgcgaggaa
ctctgcaccgccgcgcagaaggtgttcggctgggacacgcttcgccccgagcagctggac
gcgatggttccgctgctcgacggacgcgacgtcctggccgtgatggccaccggctccggg
aaatccgcgatctatcaggtgccctcactcctgttaccgggggtgacggtcgtcgtctcc
cccttgatcgcgctgcagaacgatcagatcgccggcctggaccactcggaggcgcccgag
gcggtcgcgatcaattcgcgccagcgcgagtcggagaacgaggcgaactggcgcgccgtg
ctcgaacacgacgccgactacgtcttcctcgctcccgaacaactcgccaaggacgaggtc
ctggagcgcctgaggagcgtggaggtctcgctcctcgtcgtcgacgaagcgcactgcgtc
gccatgtggggccacgacttcaggccggaatatctacgcctgggagacgtggccgaggcc
ctgggccgaccacccgtcgtcgcgctcaccgcgaccgcctcaccgccggtccgcgaggac
atcgtcgaggcgttgcgcatgcgggatccgctcgtcgtcgccggaggtttcgaccggccg
aatctcgacatcgaggtgcgcaggcacaccgacgacggtgagaagcgacgcgccgtcgtc
gaggccgtggcgtccctgccgggtccgggcatcctctacgccgcgacccgcaaggacacc
gagcggtacgccgacgccctgcgtgaacgcgggatcgacgcgtgcccctatcacgccggg
atgcgggcggccgagcgcgaggacgtccacctcggattcctcgacggtcgctgcgacgtc
gtggtcgcgacctccgccttcggcatgggcatcgacaagcctgacgtgcgtttcgtcgtg
cacgcctcggtgcccgactcggtcgattcctactaccagcagatcgggcgtgccgggcgc
gacggggaaccggccaccgtcctgatgttctaccgtcccgaggatctgtcgctcgcgacc
ttcttcaccacccacaaccccgacgaggagttgatcggtcgggtgttctcggcggtccgc
tccgcatcgccgatgaagctcggacggctgcgcaccgaactcgacgtgcgggggcggcgg
ctgtccaatgcggtgaacctgctcgaacggtgcggggctctcgtctccggccggcgtgga
ctctccgcaaccgacatcccgcgacgtcaggcgatcgagcaggcacgcgagacggccgcg
tcgggcgagcgactcgaccgatcgcgggtcgagatgatgcgcggctacgccgagacccgt
gggtgccgccgccggttcctgctcggatacttcggcgagacatcggccgacccctgcggc
cggtgcgacacctgccgggacggcgcgtccgacgaggtcgcaacggtatccgtgcttccg
ggcaccggggctgcgcaaccggactgcgagacgacggaattcatcccgaacactcgtgtg
gtgcacaccgagtggggaccgggagtggtgatgacctgcgagcacgatcgggtcaccgtc
ctgttcgacagcgagggctatcggaccctgtcgctcgccgcggtcgccgagtcgggagtg
ctgacggtcgacgacgaccaccttcccgacgaggcctccaccgcggccctgcctgcccac
atggaagaacccgtggcgtga
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