Rhodococcus sp. PD04: U9J23_12800
Help
Entry
U9J23_12800 CDS
T11027
Symbol
pafA
Name
(GenBank) Pup--protein ligase
KO
K13571
proteasome accessory factor A [EC:
6.3.1.19
]
Organism
rhpd Rhodococcus sp. PD04
Brite
KEGG Orthology (KO) [BR:
rhpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
rhpd03051
]
U9J23_12800 (pafA)
Enzymes [BR:
rhpd01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.1 Acid-D-ammonia (or amine) ligases (amide synthases)
6.3.1.19 prokaryotic ubiquitin-like protein ligase
U9J23_12800 (pafA)
Proteasome [BR:
rhpd03051
]
Prokaryotic proteasome
Bacterial regulatory particles
U9J23_12800 (pafA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pup_ligase
Motif
Other DBs
NCBI-ProteinID:
WSE20609
LinkDB
All DBs
Position
2765901..2767259
Genome browser
AA seq
452 aa
AA seq
DB search
MQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS
HPEYATAECDDLLQLVEHDHAGERVLEELLIDAEQRLAEEGIGGDIFLFKNNTDSAGNSY
GCHENYLVARVGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVS
SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGSAALVLEMIEAGVPF
RDFALDNPIRAIREVSHDLTGRRPVRLAGGRQASALDIQREYHARAVEYLHQREPDPHVA
QVVDLWGRVLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYSMELSDPKIAQLDLAYHDI
KRGRGVFDLLQRKGLAARATDDESVDAAVNTPPQTTRAKLRGDFIAAAQAAGRDFTVDWV
HLKLNDQAQRTVLCKDPFRSVDERVERLIASM
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
gtgcagcgacgaatcatgggtatcgagacggagttcggcgtcacgtgtaccttccacggg
catcgtcggttgagccccgacgaggtggcccgctatctgttccgccgggtggtgtcctgg
gggcgcagttcgaacgtcttcctgcggaacggggcgcgactgtatctcgatgtcggttcg
caccccgagtacgccaccgccgagtgcgacgacctgctccagctcgtcgagcacgaccat
gccggcgagcgggtcctcgaggaactgctcatcgacgccgagcagcgtctcgccgaggaa
ggcatcggcggcgacatcttcctgttcaagaacaacaccgattcggcgggcaactcctac
ggctgccacgagaactatctcgtcgcccgcgtcggcgagttctcccgcatctccgatgtg
ctgctgcccttcctggtgacccgccagctgatctgcggcgccgggaaggtgctgcagacc
cccaaggccgccaccttctgcctgtcgcaacgcgccgagcacatctgggagggtgtctcg
tcggcgaccacccggtcgcggccgatcatcaacacccgcgacgagccgcacgccgacgcc
gagaagtaccggcgcctgcacgtgatcgtcggggactcgaacatgtccgagaccaccacc
atgctcaaggtggggtcggcggcgctggtgctcgagatgatcgaggccggggttccgttc
cgcgacttcgcgctcgacaacccgatccgtgccatccgcgaggtctcccacgacctgacc
ggccggcgcccggtgcgcctggccgggggccggcaggccagcgcgctggacatccagcgc
gaataccacgcgcgggcggtggagtatctgcaccagcgcgaacccgatccgcacgtcgcg
caggtggtggacctgtggggccgtgtcctcgacgccgtcgaatcgcaggacttcgcgaag
gtcgacaccgagatcgactgggtgatcaagcgcaagctgttccagcgctaccaggaccgc
tacagcatggagctgtccgacccgaagatcgcccagctcgacctggcctatcacgacatc
aagcgcggtcgcggcgtgttcgacctgctgcagcgcaaggggctggcggcgcgggccacc
gacgacgagtccgtcgacgcggcggtgaacaccccaccgcagaccacccgcgcgaagctg
cgcggtgatttcatcgccgccgcgcaggccgcgggccgcgatttcaccgtcgactgggtg
cacctgaagctcaacgatcaggcgcagcgcaccgtgttgtgcaaggacccgttccggtcg
gtggacgaacgcgtcgaacggctcatcgcctccatgtga
DBGET
integrated database retrieval system
