Rhodococcus sp. PD04: U9J23_13260
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Entry
U9J23_13260 CDS
T11027
Symbol
gcvP
Name
(GenBank) aminomethyl-transferring glycine dehydrogenase
KO
K00281
glycine cleavage system P protein (glycine dehydrogenase) [EC:
1.4.4.2
]
Organism
rhpd Rhodococcus sp. PD04
Pathway
rhpd00260
Glycine, serine and threonine metabolism
rhpd00630
Glyoxylate and dicarboxylate metabolism
rhpd00670
One carbon pool by folate
rhpd00785
Lipoic acid metabolism
rhpd01100
Metabolic pathways
rhpd01110
Biosynthesis of secondary metabolites
rhpd01200
Carbon metabolism
Module
rhpd_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
rhpd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
U9J23_13260 (gcvP)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
U9J23_13260 (gcvP)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
U9J23_13260 (gcvP)
00670 One carbon pool by folate
U9J23_13260 (gcvP)
Enzymes [BR:
rhpd01000
]
1. Oxidoreductases
1.4 Acting on the CH-NH2 group of donors
1.4.4 With a disulfide as acceptor
1.4.4.2 glycine dehydrogenase (aminomethyl-transferring)
U9J23_13260 (gcvP)
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Gene cluster
GFIT
Motif
Pfam:
GDC-P
GcvP2_C
Beta_elim_lyase
Aminotran_5
Trypan_glycop
NPIP
Motif
Other DBs
NCBI-ProteinID:
WSE20698
LinkDB
All DBs
Position
complement(2875089..2877941)
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AA seq
950 aa
AA seq
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MTDAVTSNFADRHIGPDTAGLNRILDVVGVDSLDALATAAVPAAILDDRADNVPTGLDVL
DAPRSEHDVLAELKALASQNTVATSMIGHGYYDTLTPPVLLRNIIENPAWYTAYTPYQPE
ISQGRLEALLNFQTMVADLTGMEIANSSMLDEATAAAEAMTLLRRANRKSKSPRVVVDAD
LFTQTAAVLATRAEPLNIEIVTVDLATDGLPEGEFFGVILQVPGASGRIIDAAPIIAAAH
DRGALVAVGADLLAMTLITPPGEQGADACFGTTQRFGVPMGFGGPHAGYLAVGNAHTRTL
PGRLVGVSVDADGSPAYRLALQTREQHIRREKATSNICTAQVLLAVLAAMYASYHGAEGL
TGIARRVAGHARRLADGLRAGGVEVVHDEFFDTVLVRVPGRVDAVLAAALEAGINLYRVD
DDHVSISCDEATTAAHVDAVLGAFGVTAGEAAEGTALPQALARTSEFLQHEAFTRYRTET
AMMRYLRRLSDKDLALDRTMIPLGSCTMKLNAAAEMEAITWPEFAGLHPFAPADQTAGIR
RLIADLEGWLAAVTGYDAVSLQPNAGSQGEYAGLLAIRHYHLDRGDTDRDICLIPSSAHG
TNAASAVMAGMRVEVVACRPNGDVDLDDLRAKITDHGARLAAIMITYPSTHGVYEHDIAD
ICGAVHDAGGQVYIDGANLNALVGLARPGKFGGDVSHLNLHKTFCIPHGGGGPGVGPIGV
RSHLAPYLPGHPAEPGLGGAGPVSAAPYGSASILPITWAYIKMMGAEGLRRASLTAIASA
NYIARRLDEYFPVLYTGETGMVAHECILDLRPLTKATGVTVDDVAKRLADYGFHAPTMSF
PVAGTLMVEPTESEDIAELDAFIDAMISIREEIDRVGAGEWPVEDNPLRGAPHTAECLVG
EWNHPYSREIAVFPMGKSRAKVWPAVRRIDGAHGDRNLVCSCPPLEAYSG
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgacagatgccgtcacctcgaacttcgccgatcgccacatcggccccgacaccgccggc
ctgaaccggatcctcgacgtcgtcggagtcgattccctcgacgccctcgccaccgccgcg
gtgccggccgccatcctcgacgaccgtgcggacaacgtgccgaccggcctcgacgtcctc
gacgcgccccgctccgagcacgacgtactcgccgaactgaaggcactggcgtcgcagaac
accgtggcgacgtcgatgatcggtcacggctactacgacacgctcacgccgcccgtgctg
ctgcgcaacatcatcgagaaccccgcctggtacacggcctacaccccctaccagccggag
atcagccagggacgcctcgaggcgctgctgaacttccagaccatggtcgccgacctgacc
ggcatggagatcgcgaactcgtcgatgctcgacgaggccaccgccgccgccgaggcgatg
accctgctgcgccgcgcgaaccgcaagtccaagagcccgcgcgtggtcgtcgacgccgac
ctgttcacgcagaccgccgcggtgctggcgacccgcgccgaaccgctcaacatcgagatc
gtcaccgtcgacctcgccaccgacggactgcccgagggcgagttcttcggtgtgatcctg
caggtgcccggcgcctcgggccgcatcatcgacgctgctccgatcatcgcggcggcccac
gaccgcggggcgctcgtcgccgtcggcgccgacctgctggccatgaccctgatcaccccg
cccggggagcagggcgccgacgcgtgcttcggcaccacccagcggttcggtgtgccgatg
ggcttcggtgggccgcatgccggctacctcgccgtcggcaacgctcatacccgcaccctg
cccggccgtctcgtcggtgtctcggtggacgcggacggcagcccggcctaccgcctcgcg
ttgcagacccgtgagcagcatatccgccgcgagaaggccaccagcaacatctgcaccgcc
caggtgctcctcgccgtgctcgcggccatgtacgcctcgtaccacggagccgaaggcctc
accggcatcgcccgccgcgtcgccgggcacgcccgtcgtctcgccgacggtctacgcgcc
ggcggcgtcgaggtggtgcacgacgagttcttcgacaccgtcctggtgcgcgtcccgggg
cgggtcgatgccgtgctcgccgccgccctcgaggccggcatcaacctgtaccgggtcgac
gacgatcacgtgtcgatctcgtgcgacgaggcgaccaccgcggcgcatgtcgacgcggtc
ctgggtgccttcggtgtcaccgccggtgaggccgccgagggaacggcgctgccgcaggcc
cttgctcgcacgagcgagttcctgcagcacgaggcgttcactcgctaccgcaccgagacc
gcgatgatgcggtatctgcggcgtctgtccgacaaggatctcgccctcgaccggacgatg
attcccctgggctcgtgcacgatgaagctcaacgctgccgccgagatggaggccatcacc
tggcccgagttcgcgggtctgcatcccttcgctccggcggaccagacggccggcatccgc
cgtctcatcgccgacctggagggctggctcgccgcggtgacgggttacgacgccgtgagc
ctgcagcccaacgcgggcagccagggcgagtacgcgggcctgctcgcgatccgccactac
cacctcgaccgtggcgacaccgatcgggacatctgcctcatcccgtcgagcgcgcacggc
accaacgccgcgtccgccgtgatggcgggcatgcgtgtcgaggtcgtcgcgtgccgcccg
aacggcgacgtcgatctcgacgacctgcgtgccaagatcaccgaccacggtgcgcgtctg
gccgcgatcatgatcacctatccgtcgacgcacggtgtctacgagcacgacatcgccgac
atctgcggtgcggtgcacgacgccggcggtcaggtgtacatcgacggcgccaacctcaac
gctctcgtgggtctggcgcggccgggcaagttcggtggcgatgtgagccacctgaacctg
cacaagacgttctgcatcccgcacggtggcggcggtccgggtgtcggcccgatcggtgtc
cgctcgcatctggccccgtatctgccgggtcacccggcggagccgggactcgggggagcg
ggaccggtctcggcggcaccctacgggtcggcgtcgatcctgccgatcacctgggcgtac
atcaagatgatgggtgccgagggactgcgtcgcgcgtcgctgacggcgatcgcgtcggcg
aactacatcgcgcgtcgtctcgacgagtatttcccggtgctgtacacgggggagaccggc
atggtcgcccacgagtgcatcctcgatctgcggccgctgacgaaggcgacgggggtgacg
gtcgacgacgtcgcgaagcgtctggccgactacggtttccacgcgccgacgatgagcttc
ccggtggccggcaccctcatggtcgaacccaccgagagcgaggacatcgccgaactcgac
gcgttcatcgacgcgatgatctcgatccgtgaggagatcgaccgcgtcggggcaggggag
tggccggtggaggacaacccgctgcgcggggctccgcacaccgcggaatgcctggtgggt
gagtggaaccacccgtactcgcgggagatcgcggtgttcccgatggggaagagccgggcc
aaggtctggccggcggtgcggcgtatcgacggcgctcacggcgaccggaatctggtgtgc
tcgtgcccgccgttggaggcgtacagcggctga
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