Rhodococcus sp. PD04: U9J23_13735
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Entry
U9J23_13735 CDS
T11027
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rhpd Rhodococcus sp. PD04
Pathway
rhpd03030
DNA replication
rhpd03410
Base excision repair
rhpd03420
Nucleotide excision repair
rhpd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U9J23_13735 (polA)
03410 Base excision repair
U9J23_13735 (polA)
03420 Nucleotide excision repair
U9J23_13735 (polA)
03440 Homologous recombination
U9J23_13735 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhpd03032
]
U9J23_13735 (polA)
03400 DNA repair and recombination proteins [BR:
rhpd03400
]
U9J23_13735 (polA)
Enzymes [BR:
rhpd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
U9J23_13735 (polA)
DNA replication proteins [BR:
rhpd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
U9J23_13735 (polA)
DNA repair and recombination proteins [BR:
rhpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
U9J23_13735 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
U9J23_13735 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
HHH_5
DNA_pol_lambd_f
LAMTOR
EutK_C
Motif
Other DBs
NCBI-ProteinID:
WSE20782
LinkDB
All DBs
Position
complement(2979526..2982249)
Genome browser
AA seq
907 aa
AA seq
DB search
MTRASTSATSTAATDDRPTLLLLDGHSLAFRAFYALPAENFKTHSGQTTNAVYGFTSMLI
NLLRDEQPTHVAAAFDVSRKTFRAELFAAYKAQRSAAPDDFKGQIDLTKDVLGAMGIPVM
AIEGYEADDIIATLATQAHAQGFRVLVVTGDRDALQLVNNDITVLYPRRGVSDLTRFTPE
AVEEKYGLTPQQYPDFAALRGDPSDNLPGIPGVGEKTAAKWIREYGSLSGLVDRVDEVRG
KTGDALRENLSNVLLNRQLTEMVRDVAVPYTPEQLALAPWDRDRIHRLFDDLEFKVLRDR
LFETLSSAEPEAEEGFEVRGGIVEPGALGDWLAEHAPAGRRHGLAVVGTDTPYGGDATAI
AVAGADGEGAYVSTVALTPEDENALAAWLANPAVEKAVHEAKFAIHALRGRGWTLAGITS
DTALAAYLMRPGQRSFKLDDLSLRYLKRELRVEDAGAQQLSLLDDEDSADAQAAESQILA
ARAVVDLAAALDTELGDIESVRLLTEMELPLLEVLAELEATGIAVDSTHLHDLQSEFAAQ
VAAAANAAYEVIGKQINLGSPKQLQVVLFDELEMPKTKKTKTGYTTDADALQNLFDKTGH
PFLEHLLAHREHTKMKTTVDGLIKSIADDGRIHTTFNQTVAATGRLSSTEPNLQNIPVRT
EAGRRIRDGFVVGDGFDVLLTADYSQIEMRIMAHLSADEGLIEAFRTGEDLHTFVASRAF
GLPLEEVTPELRRRVKAMSYGLAYGLSAYGLAQQLKISTDEAREQMEAYFTRFGGVRDYL
YNVVEEARKVGYTSTLYGRRRYLPDLNSDNRQRREVAERAALNAPIQGTAADIIKVAMID
VQKALSEAGLRSRMLLQVHDELVLEVVEAEREQVEALVRDKMDSVIELSVPLEVSVGYGR
SWDAAAH
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
gtgacccgtgcatccacttccgcgacgtccaccgcggccaccgacgaccgcccgaccctg
ctgctcctcgacggccattccctcgcgttccgcgcgttctacgcgctgcccgccgagaac
ttcaagacccacagcgggcagaccacgaacgcggtctacgggttcacctccatgctcatc
aacctgctgcgcgacgagcagcccacgcacgtcgcggcggcattcgacgtcagtcgcaag
accttccgtgccgaactgttcgccgcctacaaggcccagcgcagcgccgcacccgacgac
ttcaaggggcagatcgacctcaccaaggacgtcctcggcgcgatggggatcccggtgatg
gcgatcgagggctacgaggccgacgacatcatcgccacgctcgcgacacaggcgcacgcc
cagggcttccgggtgctcgtcgtcacgggcgaccgcgacgcgctccagctcgtgaacaac
gacatcacggtgctgtatccgcggcgcggcgtctccgatctgacgcggttcactcccgag
gcggtggaggagaagtacggactcactccccagcagtatccggacttcgcggcgttgcgc
ggcgacccgagcgacaacctgcccggcatccccggcgtcggcgagaagaccgccgcgaag
tggatccgcgaatacggaagcctgagcggactcgtcgaccgcgtcgacgaggtgcgcggc
aagaccggcgacgcgctccgggagaacctgtccaacgtgctgctcaaccgccagctcacc
gagatggtgcgcgacgtggccgtgccgtacacccccgaacagctcgccctcgccccgtgg
gaccgcgaccgcatccaccgcctgttcgacgacctcgagttcaaggtgctgcgcgaccgg
ctgttcgagacgctctcctcggccgagcccgaggccgaggagggtttcgaggtgcgcggc
gggatcgtcgagccgggtgccctcggcgactggctcgccgaacacgccccggcgggtcga
cgtcacggcctcgccgtggtgggcaccgacaccccctacggcggcgacgcgaccgcgatc
gccgtcgccggagccgacggtgagggcgcctacgtgagcaccgtggcgctcacccccgag
gacgagaacgccctcgccgcatggctcgcgaaccccgccgtggagaaggccgtgcacgag
gcgaagttcgccatccacgcgctgcgcggacgcggctggacgctcgccggcatcaccagc
gacaccgcgctcgccgcctatctgatgcggcccgggcagcgctcgttcaagctcgacgac
ctgtcgctgcgctacctcaagcgtgagctgcgggtggaagacgccggcgcgcaacaactc
tcgctgctcgacgacgaggactccgccgacgcgcaggcggccgagtcccagatcctcgcg
gcgcgcgccgtcgtcgacctcgccgcggccctcgacaccgaactcggggacatcgaatcg
gtgcgcctgctcaccgagatggaactgcccctgctcgaggtcctcgcagaactcgaggcc
accggcatcgccgtcgactcgacgcacctgcacgacctgcagtccgaattcgcggcccag
gtcgccgccgccgcgaacgccgcctacgaggtgatcggcaagcagatcaacctcggctcg
ccgaaacagctgcaggtggtgctgttcgacgagctcgagatgccgaagacgaagaagacc
aagaccggctacaccaccgacgccgacgccctgcagaacctgttcgacaagacgggccat
cccttcctcgaacacctgctcgcgcaccgtgagcacaccaagatgaagaccaccgtcgac
ggactcatcaagtccatcgccgacgacggtcgcatccacaccaccttcaaccagaccgtc
gcggcgacgggccggctctcgtcgaccgagccgaacctgcagaacattccggtgcggacc
gaggccggtcgccggatccgcgacggtttcgtggtgggcgacggattcgacgtgctgctc
accgccgactacagccagatcgagatgcgcatcatggcgcacctgtcggccgacgagggg
ctcatcgaggcatttcgcacgggcgaggacctgcacaccttcgtggcatcgcgggcgttc
gggctgccgctcgaggaggtcaccccggagttgcgtcgccgcgtcaaggcgatgtcctac
ggcctcgcctacggattgagcgcctacgggctcgcccagcagctgaagatctccaccgac
gaggcccgcgagcagatggaggcctacttcacccgcttcggcggcgtgcgcgactacctc
tacaacgtggtcgaggaggcccgcaaggtcggctacacctccactctctacggtcgccgc
cggtatctgcccgacctcaacagcgacaaccggcagcgccgggaggtcgccgagcgcgcc
gcgctcaacgcccccatccagggcacggccgccgacatcatcaaggtcgcgatgatcgac
gtgcagaaggcactgagcgaggccggactgcggtcgcggatgctgctgcaggtgcacgac
gaactcgtgctcgaagtggtcgaggccgagcgcgaacaggtcgaggcgctcgtgcgcgac
aagatggactccgtcatcgagttgtcggtgccgctcgaggtctcggtcggttacggccgc
agctgggacgccgcggcgcactga
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