Rhodococcus sp. PD04: U9J23_15525
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Entry
U9J23_15525 CDS
T11027
Name
(GenBank) glutamate decarboxylase
KO
K01580
glutamate decarboxylase [EC:
4.1.1.15
]
Organism
rhpd Rhodococcus sp. PD04
Pathway
rhpd00250
Alanine, aspartate and glutamate metabolism
rhpd00410
beta-Alanine metabolism
rhpd00430
Taurine and hypotaurine metabolism
rhpd00650
Butanoate metabolism
rhpd01100
Metabolic pathways
rhpd01110
Biosynthesis of secondary metabolites
rhpd01120
Microbial metabolism in diverse environments
rhpd02024
Quorum sensing
Module
rhpd_M00027
GABA (gamma-Aminobutyrate) shunt
Brite
KEGG Orthology (KO) [BR:
rhpd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
U9J23_15525
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
U9J23_15525
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
U9J23_15525
00430 Taurine and hypotaurine metabolism
U9J23_15525
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
U9J23_15525
Enzymes [BR:
rhpd01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.15 glutamate decarboxylase
U9J23_15525
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Gene cluster
GFIT
Motif
Pfam:
Pyridoxal_deC
Aminotran_5
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-ProteinID:
WSE21104
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Position
complement(3359988..3361367)
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AA seq
459 aa
AA seq
DB search
MSESNAPAETLAPAFTGRLGTEPIPALRLPKSETDPEATYQFIHDELMLDGSSRLNLATF
VTTWMDPQAGRLMAETFDKNMIDKDEYPATAEIETRCVNMVAALFHAEDLDPADPSSATG
VSTIGSSEAVMLGGLALKWRWREARRAAGKDASKPNLVLGSNVQVVWEKFCRYFDVEPKY
LPMEPGRYVITPEQVREAVDENTIGVVAILGTTFTGELEPVAEIAAALDELAASGGPDVP
LHVDAASGGFVVPFLHPDLEWDFRVPRVVSINVSGHKYGMTYPGIGFVVWRSKEHLPEDL
VFRVNYLGGDMPTFTLNFSRPGNQVIGQYYNFIRLGIAGYTQIMETLRDTALMLSKQISE
IENMEIITDGSAIPVISFEVTGDPGFTVFDISHELRARGFQVPAYTMPADAEDVAVLRIV
LREGFSRDTAHKLGEDIADVVGYLRKGVGRGHTDQAFAH
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagtccaatgctccagccgagacactcgcacctgccttcaccggcagactcggt
accgaaccgattcctgctctgcgacttcccaagtcggagaccgatccggaggcgacgtac
cagttcatccacgacgagctgatgctcgacggcagctcgcggctcaacctggcgaccttc
gtcaccacgtggatggatccgcaggcgggtcgtctcatggccgagacgttcgacaagaac
atgatcgacaaggacgagtatccggccacggcggagatcgagacccgctgcgtcaacatg
gtcgcggccctgttccacgccgaagacctcgatccggccgatccgtcgtcggccaccggc
gtctcgacgatcggttcgtccgaggccgtcatgctcggcggtctcgcgctcaagtggcgc
tggcgtgaggcccgtagggccgccggcaaggacgcgtcgaagccgaacctcgtgctcggc
agcaacgtgcaggtggtgtgggagaagttctgccgctacttcgacgtcgagccgaagtac
ctgccgatggagcccggccgctacgtcatcacccccgagcaggtccgtgaagcggtcgac
gagaacaccatcggcgtcgtcgcgatcctcggcaccacctttaccggtgaactcgagccg
gtggcggagatcgccgccgcgctcgacgagctcgcggcctccggcggtccggacgtcccg
ctgcacgtcgacgccgcctccggtggcttcgtggtgcccttcctccatccggacctcgaa
tgggacttccgtgtgccgcgggtcgtgtccatcaacgtcagtggtcacaagtacggcatg
acctatccgggtatcggtttcgtcgtctggcgctcgaaggaacatctgcccgaggacctg
gtcttccgggtcaactacctcggtggcgacatgccgacgttcacactgaacttctcgcgt
cctggcaaccaggtcatcggtcagtactacaacttcatccggctcggtatcgctggctac
acgcagatcatggagaccctgcgcgacaccgcgctcatgctgtcgaagcagatctccgag
atcgagaacatggagatcatcacggacggctccgccatcccggtcatctccttcgaggtg
acgggcgaccccggcttcacggtgttcgacatctcccacgaattgcgggcccgcggattc
caggtcccggcctacacgatgccggccgacgcggaggacgtcgcggtcctgcgaatcgtg
cttcgcgagggcttcagtcgggacaccgcccacaagctcggtgaagacatcgccgatgtg
gtcggatatctccgcaagggtgtcggtcgcggtcacaccgaccaggcattcgcacactga
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