Rhodococcus sp. PD04: U9J23_16060
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Entry
U9J23_16060 CDS
T11027
Name
(GenBank) ATP-dependent DNA helicase UvrD2
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhpd Rhodococcus sp. PD04
Pathway
rhpd03420
Nucleotide excision repair
rhpd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
U9J23_16060
03430 Mismatch repair
U9J23_16060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhpd03400
]
U9J23_16060
Enzymes [BR:
rhpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U9J23_16060
DNA repair and recombination proteins [BR:
rhpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
U9J23_16060
MMR (mismatch excision repair)
Other MMR factors
U9J23_16060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
HRDC
UvrD_C_2
AAA_30
ORC-CDC6-like
Motif
Other DBs
NCBI-ProteinID:
WSE21199
LinkDB
All DBs
Position
complement(3477427..3479571)
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AA seq
714 aa
AA seq
DB search
MMEAMCADVVDGLDPEQAAAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVSAGHVSASQV
LAVTFTARAAGEMRSRLRALGIGGDGTQVQARTFHAAALRQLRYFWPQVVGDTPWQLLDR
KFAAVSQAAHRCGFPTDTDTVRDLLSEIEWSKGTLVAPEDYPAAAARAHRTPPADPERVA
RVYETYEQLKTRSGDGMYLDFDDLLLHTAAALEDNLAVAEEFRDRYRCFVVDEYQDVTPL
QQRVLDAWLGERDDLTVVGDANQTIYSFTGATPKHLLDFSRRFPDATVVRLERDYRSTPE
VVDLANRVIGAARGRIAGTRLKLVGQRPSGPEPTFAEFDDEPAEAQAVAKAVAKLMGKGV
PAAEIAVLYRINAQSEAYEQAFTQAGIPYQVRGGEGFFNRAEVRQAVNALRQVGTRDDLP
EDAGRGAGLLSLVRATLVPLGLTDTEPVGAQARERWASLVALVQLTEELLEHEPALDLQG
LLRDLAARAEARQPPTVQGVTLASLHAAKGLEWDAVFLVGLTDGTLPITHVTGDKDTPPD
EAGIEEERRLLYVGVTRARVHLQLSWALSRTAGGRRSRRRSRFLHGLIPDSSPASKIAEP
ASPRKKRPQCRVCGKPLMGTTSTMLGRCEGCPSDLDENLLVALKEWRRERSKEMKVPAYV
VFSDNTLVAIAEQQPRDDRALVAIPGIGAKKLEQYGADVLALVRGERTVDTLDL
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggccatgtgtgcggatgtggtggacggtctcgaccccgagcaggcagcagcg
gtactcgccccacgcgggccggtctgcgtgctcgccggcgccggtaccggcaagacccgc
acgatcacccgccgcatcgcccatctcgtctccgccggtcacgtctccgcgagccaggtc
ctcgccgtcaccttcaccgcccgcgcggcaggggagatgcgttcccgcctacgcgccctg
ggcatcggtggcgacggcacgcaggtgcaggcccgcaccttccacgccgctgcgctgcgg
cagctgcggtacttctggccgcaggtggtcggcgacacgccgtggcaactgctcgatcgc
aagttcgcggcggtctcgcaggcggcgcaccggtgcggcttcccgaccgacaccgacacc
gtgcgcgacctgctgtccgagatcgaatggtcgaagggcacgctcgtcgcgcccgaggac
tatcccgccgcggccgcccgcgcccaccgcaccccaccggccgatcccgagcgggtcgcg
cgcgtctacgagacgtacgagcagctcaagacccggtcgggcgacgggatgtatctcgac
ttcgacgacctgctgctgcacaccgccgcggccctcgaggacaacctcgcggtggccgag
gagttccgcgaccgctaccgctgcttcgtcgtcgacgagtaccaggatgtgacgccgctg
cagcagcgcgtgctcgacgcgtggctcggcgagcgcgacgacctcacggtggtcggcgac
gccaaccagaccatctactcgttcacgggcgccaccccgaagcacctgctcgacttctcc
cgccggttccccgacgccacggtcgtgcgcctcgaacgcgactaccgctccacgccggag
gtggtcgacctcgccaaccgcgtgatcggagcggcgcggggccgcatcgccggcacccgg
ctcaagctcgtcggtcagcgtccgtccgggccggagcccaccttcgccgagttcgacgac
gagcccgccgaagcgcaggcggtcgccaaggccgtcgcgaagctgatgggcaagggggtc
ccggcggccgagatcgcggtgctctaccgcatcaacgctcagtccgaggcctacgagcag
gcgttcacgcaggcgggtatcccgtaccaggtgcgcggcggtgaaggtttcttcaaccgc
gccgaggtccggcaggcggtcaacgccctgcgtcaggttggtacgcgcgacgacctgccg
gaggatgccggtcgcggtgccgggctgctcagcctcgtccgggccaccttggtgccgctg
ggtctgaccgacaccgaaccggtgggtgcgcaggcacgcgagcgctgggcgtcgctcgtc
gcgctcgtgcagctcaccgaggaactgctcgagcacgaacccgccctcgatctgcagggg
ctgttgcgcgatctcgcggcccgtgccgaggcgcgccagccaccgacggtccagggcgtc
accctcgcgtcgctgcacgcggcgaagggcctcgaatgggacgccgtcttcctcgtcggc
ctcaccgacggaaccctgccgatcacccatgtcaccggcgacaaggacaccccgcccgac
gaggcaggcatcgaggaggaacggcggctgctctatgtcggtgtcacccgagcccgcgtg
cacctgcaactgtcgtgggcgttgtcccgcacggcgggcggacgtcggtcgcggcgacgc
tctcgattccttcacgggctcatccccgacagttcacccgcgtcgaagatcgccgaaccg
gcctccccgcggaagaagcgcccgcagtgccgtgtctgcggtaagccgctcatgggcacc
acctcgaccatgctcggccgctgtgagggctgcccgtccgatctcgacgagaatctgctg
gtcgcgctcaaggaatggcgccgggagcgttcgaaggagatgaaggttccggcctacgtc
gtcttcagcgacaacaccctcgttgcgatcgccgaacaacagccgcgcgacgatcgtgcg
ctggtcgccatcccggggatcggggcgaagaagctcgagcagtacggcgccgacgtgctc
gccctcgtgcggggggagcgcaccgtcgacaccctcgacctctag
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