Rhodococcus sp. PD04: U9J23_22005
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Entry
U9J23_22005 CDS
T11027
Name
(GenBank) AlkA N-terminal domain-containing protein
KO
K01247
DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
rhpd Rhodococcus sp. PD04
Pathway
rhpd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rhpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
U9J23_22005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhpd03400
]
U9J23_22005
Enzymes [BR:
rhpd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
U9J23_22005
DNA repair and recombination proteins [BR:
rhpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
U9J23_22005
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AlkA_N
HhH-GPD
TRIP13_N
Motif
Other DBs
NCBI-ProteinID:
WSE22294
LinkDB
All DBs
Position
complement(4828863..4829759)
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AA seq
298 aa
AA seq
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MITTLRIPVAEPVAVGPMLASLRSHTVPAYEHHESTTGTHHRAIRTNGGAAHIAVRFDDP
ATPDDGKHGEVRHLEVHVEAAGRVDVEEIEERVRQWLDLGVDPSVVDAVFEADSVLGPLV
QTHPGLRVVGTTDWFATAVSTVLGQQVSVAAACTFAGRLVAAFGDDAPGGLRCFPTAHRL
ATVEQSDLRAVIGTTQSRARTVAELARAAADGVAPEQPSFGADLLALPGIGPWTVDYLAL
RLGDRDAYPSGDLVLRRALQVESAREATERAEQWRPWRAYAVMHLWTHATYSPPASSA
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgatcaccaccctccggatcccggtggccgaacccgttgcggtggggccgatgctcgcg
tcgctgcgaagccacaccgtccccgcctacgaacaccacgagagcaccaccggcactcat
caccgcgcgatccgcacgaacggcggtgccgcgcacatcgccgtccggttcgacgacccg
gcgacccccgacgacgggaaacacggggaggtgcggcatctcgaggttcacgtcgaggcg
gccggccgtgtggatgtcgaggagatcgaagagagggtccgtcagtggctcgatctcggc
gtcgacccgtccgtcgtcgacgcggtgttcgaggccgattccgtgctcgggcctctcgtg
cagacccatccgggtctgcgcgtggtcggcaccaccgactggttcgccaccgctgtgtcg
acggtgctcgggcagcaggtgagcgtcgcggcggcatgcacattcgcaggacggctcgtc
gcggcgttcggcgacgacgcccccggcgggttgcgatgcttccctacggcgcaccgactc
gcgaccgtcgagcagagcgacctgcgcgccgtaatcggcacgacgcagtcgcgtgcccgc
accgtcgccgaactggcacgggccgcggccgacggggtggcgccggagcaaccctcgttc
ggggcagacctcctcgcgctccccgggatcggaccgtggaccgtcgactatctggcccta
cggctcggcgaccgcgatgcctatccgtccggcgacctcgttctccgccgagccctgcag
gtggaaagcgcacgcgaagccaccgagcgcgccgaacaatggcggccgtggcgggcctac
gccgtcatgcatctgtggacgcatgccacctactcgccgcccgcatcctcggcgtag
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