Rhodococcus sp. PD04: U9J23_24930
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Entry
U9J23_24930 CDS
T11027
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
rhpd Rhodococcus sp. PD04
Brite
KEGG Orthology (KO) [BR:
rhpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rhpd03000
]
U9J23_24930
Transcription factors [BR:
rhpd03000
]
Prokaryotic type
Helix-turn-helix
Other families
U9J23_24930
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_8
AAA_lid_14
HTH_28
AAA_16
AAA_22
HTH_30
nSTAND_NTPase5
Sigma54_activ_2
HTH_23
HTH_22
Motif
Other DBs
NCBI-ProteinID:
WSE25361
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Position
unnamed1:114331..115968
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AA seq
545 aa
AA seq
DB search
MQTLRPEIELSWKRSQLSGINPARVPEPTLLDPSDSAGRLLRAARPVLDDLRVQLAGTEC
GILLVDRNCCVVSRMFDSDAMRSAMEDVGVLPGVALSEETYGTNALGTPLEVRQGLIVHG
DEHFLEPFRQFSCYGHPIVHPVTRRIEGILDITSTEKTANPLFVPFLARAVRDIEARLLE
GARESDRRVVDAFQIAARQRGVAVAAMGQDVMLTNKAAVELLEPADHVALRALVEDMPPG
GSRTLGFALTSGGYTELRISRVAGTESGALFLLDVDETRAPVRRRATLQDATSRLRSRLA
GLRSSTGSIVILGEAGSGRSWAAREFAADPMWAIDAAHVVAEGERNWSARLLEHVETGPT
YVLIEHVNLAPDSVVALLASLASRVDGPRFVFTADPADTVRPAVRDLFARCGAQVTVPAL
RQRIRELPALVAALSTELGRSEIRLGPSALAALSEHTWPGNLVELRAVLSAISDKEGAMI
RVEDLPEPYRAPARVARLGGRERAEREAIIEALQESGGNKVHASALLGISRTTLYSRIRA
LDIKM
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgcagaccttgcgcccggagatcgaactgtcctggaagcgttcgcagctcagcggtatc
aatccggcacgagtgcccgagcccacccttctcgacccgtcggattcggcagggcggttg
ttacgggccgcccgaccggtgctcgacgacctccgggtacaactggcaggtacggaatgt
ggaatcctcctcgtcgaccgtaactgctgtgttgtctcgcggatgttcgactcggacgcc
atgagatccgcaatggaggatgtcggggtactaccaggcgtcgcactgtccgaagagaca
tatggcacgaacgcgctgggaaccccactcgaagtacgtcaaggcctcatcgttcacggc
gacgagcatttcctcgaaccgttcaggcaattcagttgctatggtcacccgatcgtgcat
ccggtcacgcgcagaatcgaaggcatcctcgacatcacttcgaccgagaagacggccaat
cccctcttcgtgcctttcctcgcacgggccgtccgggacatcgaggcacgtctgctcgag
ggggcacgcgaatcggatcgccgcgtcgtcgacgcattccagatcgcagcccgccaacgc
ggcgtagccgtggcggcaatgggacaagacgtcatgctcaccaacaaggccgccgtcgaa
ctactcgagccggctgatcatgtggcgctgcgcgcacttgtggaggacatgccacccgga
gggtcgcgcacactcggcttcgcgctcaccagcggtggatacaccgagcttcgcatcagt
cgtgtggccggcaccgaaagcggtgcactgttccttctcgatgtcgacgagacccgagcg
cccgtacgtcggcgggctacgttgcaggacgcgacctctcggttgcgatcccgcctggcc
ggattgcgttccagtaccggctcaatcgtgatcctcggtgaggcaggaagcgggcggagt
tgggctgcacgagagtttgcggcggatccgatgtgggccatcgacgccgcacacgtggtg
gccgaaggtgagcgcaattggtctgcgaggctgctcgagcacgtcgagacaggacccacg
tacgtcctgatcgaacacgtcaaccttgcccctgactcggtcgtcgcgctgctggcgtct
ctcgcctcacgcgttgacggaccgagatttgtgttcaccgccgatcccgccgacaccgtc
cgccccgctgtccgggacctgttcgcccgttgcggcgcgcaagtaacggtgccggctcta
cgacagcggatccgtgaactgccggcgctcgtcgctgcgctttcaaccgagctcggacgt
tcggagattcgtttggggcctagtgcattggcagcgctgtcggaacacacgtggccgggc
aatctcgtcgaactgcgcgcagtcctcagcgccatttccgacaaggaaggcgcgatgatc
cgggtcgaggacctgcccgaaccgtatcgtgcacccgctcgggtggctcgtctgggcggc
cgcgaacgcgccgagcgggaagcgatcatcgaagcattgcaggaaagcggcggtaacaag
gtgcatgcgtccgccctcctcggcatcagccgcacaacgctgtacagccggatccgggct
ctcgacatcaagatgtga
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