Rhodococcus sp. PD04: U9J23_27590
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Entry
U9J23_27590 CDS
T11027
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rhpd Rhodococcus sp. PD04
Pathway
rhpd03030
DNA replication
rhpd03430
Mismatch repair
rhpd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U9J23_27590 (dnaE)
03430 Mismatch repair
U9J23_27590 (dnaE)
03440 Homologous recombination
U9J23_27590 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhpd03032
]
U9J23_27590 (dnaE)
03400 DNA repair and recombination proteins [BR:
rhpd03400
]
U9J23_27590 (dnaE)
Enzymes [BR:
rhpd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
U9J23_27590 (dnaE)
DNA replication proteins [BR:
rhpd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
U9J23_27590 (dnaE)
DNA repair and recombination proteins [BR:
rhpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
U9J23_27590 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
Motif
Other DBs
NCBI-ProteinID:
WSE25782
LinkDB
All DBs
Position
unnamed2:198532..202092
Genome browser
AA seq
1186 aa
AA seq
DB search
MSRSSFVHLHNHTEYSMLDGAAKVGPLFKEAERLGMTAVGMTDHGNMYGASEFYNVAKKH
GIKPIIGIEAYIAPESRFNTKRGLWGDPSQKSDDVSGSGAYTHMTMVAENSTGLRNLFKL
SSLASIEGQLGKWPRMDEELIATHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQE
IWGKDNFFLELMDHGLSIERRVREGLLEIGNKLGIPPLATNDCHYVTKDAAENHEALLCI
QTGKTLSDPTRFKFDGDGYYLKSAEEMRAIWDSEVPGACDNSVLIGERVQPYEDVWQHRD
RMPIFPVPEGETQASWLHKEVMRGLDRRFPDGPPREYIERAEYEIGVINQMGFPAYFLVV
GDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSMPDIDI
DFDDRRRGEMVRYATDKWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADQITKA
LPPPIMAKDISVAGITDPEHERYKEAVEVRALIDSNPDVAKIYQTALGLEGLIRNAGVHA
CAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDAIENI
KANRGVDIDLDTLALDDAATYAMLARGDNLGVFQLDSAGMRELLLRMAPTEFNDLIASNA
LYRPGPMGVGAHWSYADRKNGREAVTPIHPELDEPLRDILGETYALIVYQEQIMQIAQKV
AGYSLGQADLLRRAMGKKKPEVLAAEFENFRNGMRGNGYSDDAVTALWEAVLPFAGYAYN
KSHAAGYSLVMYWTAYLKANYPAEYMAGLLTSVGDDKDKTAIYLSDCRKRGITVLPPDVN
ASRVDFASVGEDIRFGLGAVRNVGANVVGSIIAAREEKGKFTDFSDYLNKIDALACSKKV
TESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAMGQFDLFGGDDADESIASVFN
VKVPDEEWDTKHKLALEREMLGLYVSGHPLDDVAGALSALADTSIAAVHAGKIRHGQKIV
IGGLVASVDRRVNKKGEPWAIVEIADLDAATEILVFSSTYTSFQHALTEDSVLLVTANAN
IREGRTSIVAVDISTPDLGNSGPSSAPMTLTLPVHACTRPNIEALRDVLQRHPGDTDVHI
VLTGKTTTRWATDPTFRVHKTPALLGDLKALFGVNCLTTVAAAANA
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgagtcggtcttcgttcgtgcatctgcacaatcacaccgagtactcgatgctcgacggt
gcggcaaaggtcggcccgttgttcaaggaggccgagcgtctcgggatgaccgcggtcggc
atgaccgaccacggcaacatgtacggcgcgagcgagttctacaatgtcgcgaagaagcac
gggatcaagccgatcatcgggatcgaggcgtacattgcgccggagtcgcggttcaacacc
aagcgggggttgtggggcgatccgagtcagaagtccgacgacgtgtcgggcagtggcgcg
tacacgcacatgacgatggtcgccgagaactcgaccggtctgcggaacctgttcaagctg
tcctcgctcgcgtcgatcgagggccagctcggcaagtggccgcgcatggacgaggaactg
atcgccacccacgccgagggcatcatcgccaccaccgggtgcccgtcgggcgagatccag
acccggctgcggctcggccacgaccgcgaggcgctcgaggccgccgcgaagtggcaggag
atctggggcaaggacaatttcttcctcgagctgatggaccacgggctgtcgatcgagcgc
cgggtgcgcgagggcctgctcgagatcggcaacaagctcgggatcccgccgctcgcgacg
aacgactgccactacgtcaccaaggacgccgccgagaaccacgaggcgctgctgtgcatc
cagaccggtaagacgctctcggaccccacgcgcttcaagttcgacggggacggctactac
ctcaagtcggccgaggagatgcgggcgatctgggactctgaggttcccggcgcgtgcgac
aactccgtgctcatcggggagcgggtgcagccgtacgaggacgtgtggcagcaccgggac
cggatgccgatcttcccggtgccggagggggagacgcaggcgagctggttgcacaaggag
gtcatgcggggcctcgaccggcgtttcccggacggcccgccgcgcgagtacatcgagcgg
gccgagtacgagatcggcgtcatcaaccagatgggcttccccgcctacttcctcgtggtc
ggcgacctcatcaaccacgcccgcgaggtcggcatccgggtcggcccgggtcgaggctcg
gccgccggctcgctcgtcgcgtacgcgatgggcatcaccaacatcgaccccatcccgcac
ggcctgctgttcgagcggttcctcaaccccgaacgcgtgtcgatgcccgatatcgatatc
gacttcgacgaccgccgccgcggcgagatggtccgctacgccaccgacaagtggggcagc
gacaaggtcgcgcaggtcatcacgttcggcaccatcaagaccaaggccgccatcaaggac
tccgcgcgagtccagttcggccagcccggtttcgcgatcgccgaccagatcaccaaggcg
ctgccgccgccgatcatggcaaaggacatctcggtggccggtatcaccgaccccgagcac
gagcggtacaaggaagcggtcgaggtccgggcgctcatcgactccaacccggatgtcgcg
aagatctaccagactgcgctcgggctcgagggcctgatccgtaacgccggcgtgcacgcg
tgcgcggtcatcatgtcgtcggagccgctcaccgacgcgatcccggtgtggaagcgtgcg
caggacggcgcgatcatcaccggctgggactacccgtcgtgcgaggccatcggcctgctg
aagatggacttcctcggtctgcgcaacctcaccgtcatcggtgacgcgatcgagaacatc
aaggccaaccgcggtgtcgacatcgatctcgacacgctcgcgctggacgacgctgcgacc
tatgcgatgctcgcccgcggcgacaaccttggtgtcttccaactcgattcggcgggcatg
cgcgaacttctgctccgcatggcgccgaccgagttcaacgatctcatcgcatcgaatgcc
ctctaccgacccggtccgatgggcgtcggcgcgcactggtcatatgcggaccgcaagaac
ggccgtgaggccgtgaccccgatccatccggaactcgacgaaccgcttcgcgacattctg
ggcgagacttacgcgctgatcgtctaccaggagcagatcatgcagatcgctcagaaggtc
gccggctactcgctcggacaggcagacctgctccgccgcgcgatgggaaagaagaagccc
gaagtgctcgccgccgagttcgagaacttccgcaacggtatgcgcggcaacggatacagc
gacgacgctgtcaccgcgctgtgggaggccgtgctgccgttcgccggctacgcctacaac
aagtcgcacgccgctggatacagcctggtcatgtactggaccgcctacctcaaggcgaac
tacccggccgagtacatggccgggctgctcacctctgtcggcgacgacaaggacaagacc
gcgatctacctgtcggactgccgcaagagaggcatcaccgtgctaccgccggacgtcaac
gcgtcccgcgtcgacttcgcctcggtcggggaggacatccggttcggcctcggtgcggtc
cgcaacgtcggcgccaacgtggtcgggtcgatcatcgcggcccgcgaggagaaggggaag
ttcaccgacttctccgactacctcaacaagatcgacgcgctcgcgtgctccaagaaggtc
accgaatccctcatcaaggcgggcggatttgattcactcgggcatccacgcaagggtctg
atgctggtgcacgccgacgcgatcgacgcggtgatgggcaccaagaaggccgaggcgatg
ggtcagttcgacctgttcggcggcgacgacgccgacgagtcgatcgcgtcggtgttcaac
gtcaaggtccccgacgaggaatgggacaccaagcacaagctcgctctcgaacgcgagatg
ctgggcctgtacgtgtccgggcatcccctcgacgatgtcgccggcgcactttctgcactc
gctgacacatcgatcgcggcagtgcacgccgggaagattcgccacggccagaagatcgtg
atcggcggcctcgtcgcatcggtcgaccgccgcgtaaacaagaagggcgagccctgggcc
atcgtcgagatcgccgacctcgacgctgccaccgagatactcgtcttctcctcgacctac
accagcttccaacacgccctcaccgaggactccgtcctactcgtcaccgcgaacgccaac
atccgcgaaggcaggacgtcgatcgtcgcagtcgacatctccacacccgacctgggaaat
agtggaccatcctccgccccgatgaccctcaccctcccagtccacgcctgcacacgacca
aacatcgaagcccttcgtgacgtcctacagcgtcaccccggggacaccgacgtgcacatc
gtgctgactggcaaaacgacgacacgatgggcaacggacccgacgttccgggtccacaag
acgccggccctactgggagatctcaaggccctgttcggggtcaattgcctgacaacagtt
gccgctgcggcgaatgcgtaa
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