Rhodococcus sp. PAMC28705: E5769_15705
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Entry
E5769_15705 CDS
T11376
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rhpm Rhodococcus sp. PAMC28705
Pathway
rhpm03030
DNA replication
rhpm03430
Mismatch repair
rhpm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhpm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E5769_15705 (dnaE)
03430 Mismatch repair
E5769_15705 (dnaE)
03440 Homologous recombination
E5769_15705 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhpm03032
]
E5769_15705 (dnaE)
03400 DNA repair and recombination proteins [BR:
rhpm03400
]
E5769_15705 (dnaE)
Enzymes [BR:
rhpm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
E5769_15705 (dnaE)
DNA replication proteins [BR:
rhpm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
E5769_15705 (dnaE)
DNA repair and recombination proteins [BR:
rhpm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
E5769_15705 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
QCB51448
LinkDB
All DBs
Position
complement(3429731..3433267)
Genome browser
AA seq
1178 aa
AA seq
DB search
MADSFVHLHNHTEYSMLDGAAKIAPMFAEAGRLGMTAVGMTDHGNMYGASEFYNEAKKAG
IKPIIGIEAYVAPESRFNKKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLS
SLASIEGQLGKWARMDEELIATHAEGIIATTGCPSGEVQTRLRLGQDREAMEAAAKWQEI
WGPENFFVELMDHGLSIERRVREGLLEISKKLSIPPLATNDCHYVTKDAAVNHEALLCIQ
TGKTLSDPTRFKFDGDGYYLKSAAEMRELWDDQVPGACDSTLAIAERVQPYDDVWAHRDR
MPIFPVPEGHTQGTWLRHEVMTGLDRRFPDGPTEEYLARAEYEIGVILEMGFPAYFLVVG
DLINHAKAVGIRVGPGRGSAAGSLVAYSMGITNIDPLPHGLLFERFLNPERVSMPDIDID
FDDRRRGEMVRYATEKWGSDRVAQVITFGTIKTKAAIKDAARVQFGQPGFGIADQITKAL
PPPIMAKDISVAGITDPAHERYKEATEVRALIDSNPDVATIYKTAKGLEGLIRNAGVHAC
AVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDAIENIK
ANRGIDIDLDALPLDDPATFELLSRGDTLGVFQLDGSAMRDLLRRMQPTGFEDIVAVLAL
YRPGPMGMNSHNDYADRKNARQEVKPIHAELEEPLKVILGETYGLVVYQEQIMQLAQKVA
GYSLGQADLLRRAMGKKKLSELEKAYAGFRQGMLDNSFSEAAIKALWDTVLPFAGYAFNK
SHSAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAALYLADCRKLGITVLPPDVNE
SELNFASVGTDIRFGLGAVRNVGTNVVASILRARSEKSKYTDFSDYLQKIDAVACSKKVT
ESLIKAGAFDSLDHPRKGLMLIHADAIDAVMGTKKAEAIGQFDLFGGEDADESISAVFNV
RVPDEEWDSKHRLALEREMLGLYVSGHPLLGVEHMLNAQSDTNIPAILEGDVKDGTQVTI
GGILASVNRRVNKNGLTWASAQLEDLVGGIEVLFFPQAYSVFGADVTEDSVVLVKGRVSV
RDDRISLIANDLAVPDLSAVGVAKPLAVSLPTRQCTADKVGALKKILMSHPGTSDVHLRL
VSGDKVTAMKLDDSLRVTPTSALMGDLKALFGPGCLAG
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
gtggctgactcgttcgttcatctgcacaaccacaccgagtactcgatgctcgacggggcc
gcgaagatcgcgccgatgttcgccgaggccggacgcttggggatgaccgcggttgggatg
accgaccacggcaacatgtacggcgcgagcgagttctacaacgaggccaagaaggcgggc
atcaagccgatcatcggcatcgaggcgtatgtcgcgcccgagtcgagattcaacaagaag
cgtgtgctctggggcgaccggagtcagaagtccgacgacgtgtccggcagtggcgcgtac
acccacatgacgatggtcgccgagaatgccaccggtctgcgcaacctgttcaagttgtcc
tcgctggcatccatcgagggccaattgggcaagtgggcacggatggatgaagagctcatc
gccacacatgcagaaggcatcatcgccaccaccgggtgcccgtcgggtgaggttcagacg
cgacttcggctcggtcaggatcgcgaggcgatggaggctgccgccaagtggcaggaaatc
tggggcccggagaacttctttgtcgagttgatggaccacgggttgtcgatcgagcgccga
gtccgcgaaggtctgctcgagatcagcaagaagctgtcgatcccgcccctcgccacgaac
gactgccattacgtcacgaaagacgcagcggtcaatcacgaggcgctgctgtgcattcag
acgggcaagactctcagcgatcccacccgcttcaaattcgacggcgacggctactacctc
aagtcggcagcagaaatgcgcgaactatgggacgaccaggttcctggcgcctgcgacagc
acgcttgccatcgccgagcgcgtccagccttacgacgacgtctgggcgcaccgtgaccgt
atgccgatcttccccgttcccgaaggacacacccagggaacgtggcttcgccacgaggtc
atgaccgggctcgatcgccgtttccccgacggtccgaccgaggaatacctcgcccgggcc
gagtacgagattggcgtcatcctcgaaatggggttcccggcctacttcctcgtcgtcgga
gacctcatcaaccacgcaaaggccgtcggcatccgagtaggccccggccgtggctcggct
gcaggctctctcgtggcgtactcgatgggtatcaccaatatcgatccgcttccgcacgga
ctgttgttcgagcggttcctgaaccccgagcgcgtgtcgatgcccgatatcgatatcgac
ttcgatgatcgccgacgcggtgagatggtccgctacgcaaccgagaagtggggcagcgat
cgcgtcgctcaggtcatcaccttcggaaccatcaagacgaaggccgcgatcaaggatgct
gcgcgtgttcagttcgggcagccggggttcggtatcgccgatcagatcaccaaggcgctt
ccacctcccatcatggccaaggacatctccgttgccgggatcaccgatccggcgcacgag
cggtacaaggaagccaccgaagtccgtgcgctcatcgattccaatcctgacgtggcgacg
atctacaaaacggccaagggcctcgaagggctgatccgtaacgccggcgtgcacgcctgc
gcggtgatcatgtcctccgagccgctcaccgacgcgatcccggtctggaagcgcgcccag
gacggcgcgatcatcaccggctgggactacccgtcgtgtgaggcgatcggcctgctcaag
atggacttcctcggcctgcgaaacctcaccgtcatcggtgatgcaatcgagaacatcaag
gccaacagaggtatcgacatcgatctcgatgcgttgccgctcgatgatccggcgacgttc
gaattgctttcgcgcggtgacactctcggtgtgttccagctcgacggcagtgcaatgcga
gacctgctccgacgcatgcagcccaccggattcgaggacatcgtcgcagttcttgcgttg
taccgcccgggcccgatggggatgaactcgcacaacgattacgcagatcgtaagaatgct
cgacaagaggtcaagcccatccacgccgaactggaagaaccactcaaggtgattctcggc
gagacctacggactggtcgtgtaccaggagcagatcatgcagttggcgcagaaggtggcc
gggtactcgctcggccaggccgacctgctgcgtcgggcgatgggtaagaagaagctttcg
gagctggagaaggcgtatgccggtttccgacaaggcatgctggacaacagtttttccgag
gcagctatcaaggcgctgtgggatacggttctgccgttcgccggatacgcgttcaacaag
tcgcactccgccggttacggtctggtgtcctactggacggcgtatctgaaggcgaactac
cccgccgaatacatggcagggcttcttaccagtgtcggcgacgacaaggacaaggcagcg
ctgtatctggccgactgccgcaagctcggtatcaccgtgttgcccccggacgtcaacgaa
tccgaactcaacttcgcctccgtcggcacggacattcgtttcggtctcggcgcggtgcgt
aacgtcggcaccaacgtcgtggcctccattcttcgtgcgaggtcggagaagtcgaagtac
accgatttctccgactatctccagaagatcgatgcggttgcatgtagcaagaaggtcacc
gagtcgctcatcaaggcgggcgccttcgattcactggaccaccctcgaaaagggttgatg
ctcattcacgccgacgccatcgatgcggtgatgggcaccaagaaggccgaggcgatcggg
cagttcgacctcttcggcggcgaggacgccgacgagtcgatctcggcggtgttcaacgtg
cgtgttccggacgaggagtgggactcgaagcatcggctggcactcgaacgagaaatgctc
ggtctgtacgtgtccggtcacccactgttgggggtcgagcacatgttgaatgcgcagtcg
gataccaacattccggcgattctcgaaggcgatgtcaaggacggcacccaggtcaccatc
ggcggaattcttgcctcggtcaaccggcgcgtcaacaagaacggccttacctgggcatcg
gcgcaattggaagacctcgtcggcggcatcgaggtgctgttcttcccgcaggcgtattcg
gtcttcggcgcagatgtgaccgaagactccgtggtactggtcaaggggcgagtatcggtg
cgtgacgatcggatttcactgatcgccaacgatctcgcggtacctgacctctcggctgtc
ggagtcgcgaagccattggccgtcagcctcccgacccgtcagtgcacggccgacaaagtc
ggtgcactgaagaagatattgatgtcccatccgggtacttcggatgtgcatctgcgtctg
gtgagcggagacaaggtgaccgcaatgaagctcgacgacagtctgcgggttaccccgacg
tcggcgttgatgggtgacttgaaggcactgttcggtcctggctgcttggcaggctga
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