Rhodococcus sp. p52: IM25_11895
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Entry
IM25_11895 CDS
T05434
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rhq
Rhodococcus sp. p52
Pathway
rhq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
IM25_11895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhq03400
]
IM25_11895
Enzymes [BR:
rhq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
IM25_11895
DNA repair and recombination proteins [BR:
rhq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
IM25_11895
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
AAA_11
Viral_helicase1
UvrD-helicase
NAT10_TcmA_helicase
SH3_13
AAA_22
AAA_16
TraI_hel_assoc_N
Mg_chelatase
AAA_24
Motif
Other DBs
NCBI-ProteinID:
AOD24341
LinkDB
All DBs
Position
2560935..2562812
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AA seq
625 aa
AA seq
DB search
MTDVRIAQRGKGALRQFNEVGALSAADVHVALRLAALGGEDDPHVHLATALAVRAVRSGS
VCLDLTRFREVTVDEDADGHPVVAPASLPWPRDEDVLAALRRSPLVVGGDRGPLRPLRLV
DTAEGPLLYLDRYFRQEQTIRRVLAERTATFPDLDEERIATTLDELFHHPDDPSRPAPAP
DRQRVAAALAATRPTTVIAGGPGTGKTHTVARILALLPRLYGHELRIGLAAPTGKAAARL
QESVREQETELGLPPNLTAMTVHRMLGWQRGRTRFRYHAGNHLPYDVIVVDETSMVSLTM
MCRLLEAVRPDTRLVLVGDPDQLASVDAGAVLADLVGRPVSGTLDPVFERVVARDVAAAD
DPAEAAFTPTQRARLGGGVVRLSRGRRFGGAIAELAVAVRKGADDEVLDILRRGDPEVSF
VAPSDLDALRDDIVRSAAEVTKSAETGDVETALKRFEEHRLLCAHRDGPAGVQWWARQAA
EWIGEAAGQRLDPESWYPGRPLLVTANDHDMQIYNGDTGVVVRRGDELVAAFARGETPFE
LRPSQLPAVSTVYAMTIHRSQGSQYGTVSVVLPDSGSALLTRELLYTAITRARSHVRIIG
TEDAVRAGVARQVLRASGLRREIRV
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgttcggatcgcccagcgcggcaagggcgctctgcggcagttcaacgaggtg
ggcgcactctccgccgccgacgtgcacgtcgccctgcgactcgcggcgctcggcggcgag
gacgacccgcacgtgcatctcgccaccgcgctggcagtgcgtgccgtgcgatccgggtcg
gtgtgcctcgacctcacccgtttccgcgaggtcacggtcgacgaggacgcggacggccat
cccgtcgtcgcccccgcgagcctgccgtggcctcgcgacgaggacgtgctcgcggcgctg
cgtcgcagccccctcgtggtcggtggcgaccgcggacctctgcgtccgctgcgtctcgtc
gataccgccgaaggtccgctgctgtatctcgaccggtacttccggcaggagcagacgatc
cgccgggtgctcgccgagcgcacggcgacgttccccgacctcgacgaggagcgcatcgcg
acgacactcgacgagctgttccaccatcccgacgatccctcccggcccgcgccggcaccc
gatcgtcagcgcgtcgcggcggcactcgccgccacccgaccgaccacggtgatcgcgggc
gggccgggcaccggcaagacccacaccgtggcgcggatcctcgcgctgctcccccgcctg
tacggacacgaactgcgcatcggcctggccgctcccaccggcaaggccgctgcgcgcctc
caggaatcggtgcgcgagcaggagaccgagctgggtctgccgccgaatctcaccgccatg
accgtgcaccggatgctcggctggcagcgcggccgcacccgcttccgctaccacgcgggc
aaccacctgccgtacgacgtgatcgtcgtcgacgagacgtcgatggtgtcgctgacgatg
atgtgccgcctgctcgaggcggtgcggcccgacacccggctcgtcctcgtgggcgacccc
gaccagctcgcctcggtcgacgccggtgcggtgcttgccgacctcgtggggcgcccggtc
agcggcaccctcgatccggtcttcgaacgggtcgtcgcccgcgatgtggcggccgccgac
gaccccgccgaggcggccttcactccgacccaacgcgcccggctcggtggcggtgtcgtg
cggctgagccgcggccgccgcttcggtggtgcgatcgccgagctggcggtggccgtccgc
aagggcgccgacgacgaggtgctcgacatcctgcgcaggggcgacccggaggtctcgttc
gtggccccctccgacctcgacgccctgcgcgacgacatcgtccgctccgccgccgaggtc
accaagtccgccgagacgggggacgtcgagacggcgctgaagcggttcgaggaacatcgg
ttgctgtgcgcgcaccgtgacggcccggccggtgtgcagtggtgggcgcggcaggccgcc
gagtggatcggggaggccgcggggcagcgactcgatcccgagagctggtatccgggccga
ccgttgctcgtcaccgcgaacgaccacgacatgcagatctacaacggcgacaccggcgtg
gtcgtgcggcgcggcgacgaactcgtcgcggcgttcgcacgcggcgagacgccgttcgaa
ctgcgcccgagtcagctcccggcggtgagcaccgtctacgcgatgacgatccaccgcagc
cagggcagtcagtacggcaccgtctcggtggtgctgcccgattccggatcggcgctgctc
acccgcgaactgctgtacaccgcgatcacgcgtgcgcggtcgcacgtgcggatcatcggg
accgaggatgcggtacgcgcgggcgtggcacggcaggtgctccgagcgagtgggctgcgg
cgggagatccgcgtgtag
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