Rhodococcus sp. p52: IM25_12650
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Entry
IM25_12650 CDS
T05434
Name
(GenBank) deoxyribonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
rhq
Rhodococcus sp. p52
Pathway
rhq03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rhq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
IM25_12650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhq03400
]
IM25_12650
Enzymes [BR:
rhq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
IM25_12650
DNA repair and recombination proteins [BR:
rhq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
IM25_12650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
AOD22354
LinkDB
All DBs
Position
complement(2724620..2725390)
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AA seq
256 aa
AA seq
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MRIGAHVRQDDDPIGQGEHLGADLVQVFLSDPQKWTKPGEHPRTEEILASDVDVVVHSPY
VINVASLNNRVRMPSRKAVADHAEAAARIGALGLVVHGGHVRAGEDVAAGVENWRKLFER
QEDKGGFGVPILVENTAGGDFAMARYIDAIGRLWDAIGDYSPGFCLDTCHAWAGGEDLVG
VVERVRAVTGRIDLVHLNNSRDEFDSARDRHANLADGQIDPQLLAEIAVQADAPIVLETP
AEGLAEDIAFLREHST
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atgcggataggtgcgcacgtccggcaggacgacgatcccatcggtcagggcgaacatctc
ggtgccgatctggtgcaggtgttcctgtcggacccgcagaaatggacgaagcccggtgag
catccgcgcaccgaggagatcctcgcatcggacgtcgacgtggtggtgcactcgccgtac
gtcatcaacgtagcgagcctgaacaacagggtgcggatgccgtcgcgcaaggccgtcgcc
gaccacgccgaggcggccgcgcgtatcggtgcgctcgggctggtggtccacggcgggcac
gtgcgcgcgggtgaggacgtcgccgccggggtggagaactggcgcaagctgttcgaacgg
caggaggacaagggcgggttcggggtgccgatcctcgtcgagaacacggcgggcggcgac
ttcgcgatggcccgctacatcgacgcgatcggacgtctgtgggacgccatcggcgactac
agtcccggcttctgcctcgacacctgccacgcctgggcgggcggtgaggatctcgtcggt
gtcgtcgaacgggtgcgtgcggtcaccggccggatcgatctggtgcacctgaacaattcg
cgtgacgagttcgattcggcccgcgaccggcacgccaatctcgccgacgggcagatcgat
ccgcagttgctcgcggagatcgcggtgcaggccgacgcaccgatcgtgctcgagaccccg
gcggagggactcgccgaggacatcgccttcctgcgggagcactcgacctga
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