Rhodococcus sp. p52: IM25_13005
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Entry
IM25_13005 CDS
T05434
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rhq
Rhodococcus sp. p52
Pathway
rhq03030
DNA replication
rhq03430
Mismatch repair
rhq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IM25_13005
03430 Mismatch repair
IM25_13005
03440 Homologous recombination
IM25_13005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhq03032
]
IM25_13005
03400 DNA repair and recombination proteins [BR:
rhq03400
]
IM25_13005
Enzymes [BR:
rhq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IM25_13005
DNA replication proteins [BR:
rhq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IM25_13005
DNA repair and recombination proteins [BR:
rhq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IM25_13005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TerD
RNase_T
BRCT
Rv2179c-like
PTCB-BRCT
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
AOD24371
LinkDB
All DBs
Position
2807909..2809678
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AA seq
589 aa
AA seq
DB search
MTLPRDHRWVVVDVETSGVRSNAHRVLSVAALVLREDGSVEQEFSTLVDPGCDPGPVHIH
NLTRERLTGSPRFEDIAGELAGILDGATIVAHNASFDYGFLDAEFRRAGTSLPAEHRLCT
LALSRRLELDVPNFRLATLAQHWQVHQLQEHDAYDDARVLSEIFLRSAAMADNLQLPLPV
VNCRSRKSVYPASVPRVACQWKNPGRLGNDGLVQGMKVVISGSTVTPRVALANRLTDAGL
DVMNNASRQTSVVVCNDPTVQTAKVRKAMAEGIPVISEQQLEELLTRVSPGESKVATVVD
IIPPPEPQVAVVPPVRPPTGQKPKLWTGRKVLLLGGTHLQAVMMRSRLTQLGARPALNFT
AAVTDVLVLEGGEADKRMTRVAARELPVLRPDDVDAAVENGVMPPHTRVESRLTAPVLSR
GEVIDLPSDSHRWAVNVAWKAEAVGDEFDLDIVAFLLGADEKVDTDDDFVFYNNPLYDDG
VIELTIDGSSEHCIRVDLAELPAECERIAIAAAIDGNRTFGELGAVSVAVDSETGTAATF
VLDAGTTERTMVLAEIYRRAGKWRLRAVGQGYDDDLAALARRYGVEVDD
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgacgttgccccgcgaccatcgatgggtggtggtcgacgtcgaaacctcgggtgtgcgg
tccaacgcccacagggtcctgagcgtggccgccctcgtgttgcgcgaggacggctctgtc
gagcaggagttctcgaccctcgtcgaccccggctgcgacccgggaccggtgcacatccac
aacctcacgcgggagcgcctcaccgggtcgccgcgcttcgaggacatcgccggtgaactg
gccgggattctcgacggcgccacgatcgtcgcccacaacgcgtcgttcgactacggattc
ctcgacgccgagttccgtcgggccggcacgtcgctgccggcggagcaccgtctgtgcacg
ctcgcgttgtcgcgccggctcgaactcgacgtccccaacttccgattggcgacccttgcg
cagcactggcaggtccaccagctgcaggagcacgacgcctacgacgacgcgcgcgtcctg
tcggagatcttcctgcgcagcgccgcgatggccgacaacctgcaactgccgctgcccgtc
gtcaactgccgcagccgcaaatcggtgtatcccgcatccgttccgcgggtcgcgtgccag
tggaagaacccgggtcgcctcggcaacgatgggctcgtccaaggcatgaaggtcgtgatc
agcggctccaccgtcactccgcgggtcgcactcgcgaaccggctgaccgacgccggactc
gacgtgatgaacaacgcgagcagacagaccagcgtcgtggtgtgcaacgacccgaccgtg
cagaccgccaaggtccgcaaggcgatggccgaaggcattcccgtgatcagcgaacagcag
ctcgaggagctgttgacgcgggtgagtccgggcgaatcgaaggttgcgaccgtcgtcgac
atcatcccgccaccggaaccgcaggtcgcggtggtgcccccggtccggccgccgaccggg
cagaagcccaagctgtggacaggacgcaaggtgctgctgctcggcggcacgcacctgcag
gccgtcatgatgcgctcgcgtctcacccagctcggtgcccgcccggccctcaacttcacg
gccgccgtcaccgacgtgctggtcctcgaaggaggagaggccgacaagcggatgacgcgg
gtcgcggcacgtgagctgcccgtcctgcgacccgacgacgtcgatgccgcagtggagaac
ggagtgatgcccccgcacacgcgggtggagtcacggctcacggcgccggtgctgtcccgc
ggtgaagtgatcgacctgccgtccgacagtcaccgctgggccgtgaacgtcgcctggaag
gccgaagctgtcggcgacgaattcgatctcgacatcgtcgccttcctgctcggcgccgac
gagaaggtcgacaccgacgacgacttcgtcttctacaacaatccgctctacgacgacggc
gtcatcgaactgaccatcgacggttcgagtgagcactgcatccgcgtcgacctcgcggaa
cttcccgccgaatgcgaacgcatcgccatcgcagcggccatcgacggcaaccgcaccttc
ggcgaactcggcgcggtatcggtcgcggtcgacagtgagaccggcaccgccgcgaccttc
gtgctcgacgccggcaccaccgaacgcaccatggtcctcgccgagatctaccgccgcgcc
ggcaaatggcggctgcgcgcggtggggcaggggtacgacgacgacctcgcagccctcgca
cgccgttacggggtggaagtcgacgactga
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