Rhodococcus sp. p52: IM25_16205
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Entry
IM25_16205 CDS
T05434
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rhq
Rhodococcus sp. p52
Pathway
rhq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IM25_16205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhq03019
]
IM25_16205
03400 DNA repair and recombination proteins [BR:
rhq03400
]
IM25_16205
Enzymes [BR:
rhq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IM25_16205
Messenger RNA biogenesis [BR:
rhq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IM25_16205
DNA repair and recombination proteins [BR:
rhq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IM25_16205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3553
TniB
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AOD22943
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Position
complement(3496856..3498589)
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AA seq
577 aa
AA seq
DB search
MYRSSSDIASEDAREELCAAAQKVFGWDTLRPEQLDAMVPLLGGRDVLAVMATGSGKSAI
YQVPSLLLPGVTVVVSPLIALQNDQIAGLDHSEAPEAVAINSRQRESENEANWRAVLEHD
ADYVFLAPEQLAKDEVLERLRSVEVSLLVVDEAHCVAMWGHDFRPEYLRLGDVAEALGRP
PVVALTATASPPVREDIVEALRMRDPLVVAGGFDRPNLDIEVRRHTDDGEKRRAVVEAVA
SLPGPGILYAATRKDTERYAETLRERGIDACPYHAGMRAAERGDVHLGFLDGRCDVVVAT
SAFGMGIDKPDVRFVVHASIPDSVDSYYQQIGRAGRDGEPATVLMFYRPEDLSLATFFTT
HNPDEELIGRVFSAVRSASPMRLGRLRTELDVRGRRLANAVNLLERCGALVSGRRGLSAA
DIPRRKAVEHARETAASGERLDRSRVEMMRGYAETRGCRRRFLLGYFGETLSDPCGRCDT
CRDGASDEVATVSVLRGADTAPAYCETSVFAPNTHVVHAEWGPGVVMTCEHDRVTVLFDS
EGYRTLSLDAVAESGVLKVDDPAPAEPVPAHAEEPVA
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgtatcggtcgtcgtccgacattgcatcggaggatgcacgcgaggaactctgcgccgcc
gcgcagaaggtgttcggctgggacacgctgcgtcccgaacaactggacgcgatggttccg
ctgctgggcggacgcgacgtcctcgccgtgatggccaccgggtccgggaagtccgcgatc
tatcaggtgccctcgctgctgctaccgggggtaacggtcgtcgtctcgcccttgatcgcg
ctccagaacgatcagatcgccggtctggaccactcggaggcacccgaggcggtcgcgatc
aattcgcgccagcgcgagtcggagaacgaggcgaactggcgggccgtgctcgaacacgat
gccgactacgtcttcctcgcccccgagcagctcgccaaggacgaggtcctggagcgtctg
agaagcgtggaggtctcgctcctcgtcgtcgacgaagcgcactgtgtcgccatgtggggc
catgacttcaggccggaatatctacgcctgggagacgtggccgaggccctgggccggcca
cccgtcgtcgcgctcaccgcaaccgcctcacccccggtccgcgaggacatcgtcgaggcg
ttgcgcatgcgggatccgctcgtcgtcgccggtggtttcgaccgcccgaatctcgacatc
gaggtgcgcaggcacactgacgacggcgagaagcggcgcgccgtcgtcgaggccgtggcg
tccctgcccggtcccggcattctgtacgccgcgacccgcaaggacaccgagcgatacgcc
gagaccctgcgtgaacgcgggatcgacgcgtgcccgtatcacgccgggatgcgcgcggcc
gagcgcggggacgttcacctcggattcctcgacggtcgctgcgatgtcgtggtggcgacc
tccgccttcggtatgggcatcgacaagccggacgtgcgtttcgtcgtgcacgcctcgata
ccggactcggtcgattcctactaccagcagatcgggcgcgccggacgcgacggggagccg
gccaccgtcctgatgttctaccgtcccgaggatttgtcgctcgcgaccttcttcaccacc
cacaaccccgacgaggagctgatcggccgggtgttctcggcggtccgctccgcgtcgccg
atgaggctcggacggctgcgtaccgagctcgacgtgcgggggcggagactggccaacgcg
gtgaacctgctcgaacggtgcggagcgctcgtctccggccggcgtggactctccgccgcc
gacatcccccgacggaaggcggtcgagcacgcacgcgagacggccgcgtcgggcgaacga
ctggaccgatcgcgggtcgagatgatgcggggctacgccgagactcgcggttgccgccgc
cggttcctgctcgggtacttcggcgagacgctgtccgacccctgcggccggtgcgacacc
tgccgggacggcgcgtccgacgaggttgcgacggtatccgtgcttcggggcgccgatact
gccccggcgtactgcgagacgtccgtgttcgccccgaacacgcatgtcgtgcatgccgag
tggggaccgggagtggtgatgacctgcgagcacgatcgcgtcaccgtcctgttcgacagc
gagggttatcggacactgtcgctcgatgcagtcgccgagtcgggggtgctgaaggtcgac
gaccccgcaccggcagagcccgtacctgcccatgccgaagaacccgtggcgtga
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