Rhizobium sp. 11515TR: CKA34_03515
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Entry
CKA34_03515 CDS
T06097
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rhr
Rhizobium sp. 11515TR
Pathway
rhr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKA34_03515 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhr03019
]
CKA34_03515 (pnp)
03016 Transfer RNA biogenesis [BR:
rhr03016
]
CKA34_03515 (pnp)
Enzymes [BR:
rhr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CKA34_03515 (pnp)
Messenger RNA biogenesis [BR:
rhr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CKA34_03515 (pnp)
Transfer RNA biogenesis [BR:
rhr03016
]
Prokaryotic type
tRNA degradation factors
CKA34_03515 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
ASW07965
LinkDB
All DBs
Position
complement(730043..732181)
Genome browser
AA seq
712 aa
AA seq
DB search
MFDIHTVEIEWAGRPLKLETGKIARQADGAVVATYGETVVLATVVSAKAPKPGQDFFPLT
VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH
DLENDPDILSMVATSAALTLSGIPFMGPIGGARVGYINGEYVLNPHLDEMDESSLDLVVA
GTQDAVLMVESEAKELPEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPRDFQPEDYSE
LEKEMLGLAEAELRDAYKITQKADRYAAVDAVKAKVKAHFLPEEGEARYTAEEVGAIFKH
LQAKIVRWNILDTSSRIDGRDLQTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTG
EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAE
QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLS
DILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITEEIMKVALSQAQGGRTHILGEMAK
AISESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS
SSGKEIEAARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV
AKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEIAADKKKDDAAE
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgttcgatatccataccgtcgaaatcgagtgggcaggccgtccgctgaagctggaaacc
ggcaagatcgcccgtcaggccgatggtgccgtcgtcgccacctacggcgagaccgtggtg
cttgcgactgtcgtttccgccaaggctccgaagccgggccaggacttcttcccgctcacc
gtcaactatcaggaaaagacctacgcagccggcaagatccccggcggctacttcaagcgc
gagggccgtccgagcgaaaacgaaacgctcgtttcccgcctgatcgaccgcccgatccgt
ccgctcttcccggaaggctacaagaacgacacgcaggttgtcgtcaccgtcatccagcat
gacctcgaaaacgatccggacatcctgtccatggtcgcgacctcggcagccctgacgctc
tccggcatccccttcatgggcccgatcggcggcgcccgcgtcggctacatcaacggcgaa
tacgtgctgaacccgcatctcgacgagatggacgagtcgagcctcgacctcgtcgtcgcc
ggtacgcaggacgccgttctgatggttgaatccgaagccaaagaactgcctgaggacgtc
atgctcggcgccgtcatgttcggtcaccgcggcttccagccggttatcgacgcgatcatc
aagctcgccgaagtggcagccaaggagccccgcgacttccagccggaagattattccgaa
ctcgagaaggaaatgctcggccttgccgaagccgaactccgtgacgcctacaagatcacc
cagaaggccgatcgctacgctgccgtcgacgccgtcaaggcgaaggtgaaggcacacttc
ttgccggaagaaggcgaagccaggtacacggccgaagaagtcggcgccatcttcaagcac
ctgcaggcgaagatcgttcgctggaacatcctcgacacgtcgagccgtatcgacggccgt
gacctgcagacggttcgcccgattgtctcggaagtcggcattctgccgcgcacgcacggt
tcggcgctgttcacccgcggtgaaacgcaggcaatcgtcgtcgccacgctcggcaccggc
gaagacgaacagtatgtcgacagcctgacgggcatgtacaaggagcgcttcctgctccat
tacaacttccctccctactcggttggcgaaaccggccgcatgggctccccgggccgtcgc
gaaatcggtcacggcaagctcgcatggcgcgctatccgcccgatgctgccgtcggctgag
cagttcccctacacgctacgcgtcgtctccgaaatcaccgaatcgaacggttcgtcctcg
atggcaaccgtctgcggcacctcgctcgctctgatggatgccggcgtgccgctggccaag
ccggttgccggcattgccatgggtctgatcctggaaggcgatcgcttcgccgttctctcc
gacattctcggcgacgaagaccatctcggcgacatggacttcaaggttgccggcacggaa
gcaggcatcacctcgctgcagatggacatcaagatcgccggcatcaccgaagagatcatg
aaggtcgctctcagccaggcccagggcggtcgcacacacatcctcggcgaaatggccaag
gccatctccgagagccgtggccagctcggcgaattcgcaccacgcatcgaggtcatgaac
attccggtcgacaagatccgcgaagtcatcggctccggcggcaaggtcatccgagaaatc
gtcgaaaagaccggcgccaagatcaacatcgaggacgacggcaccgtcaagatcgcctcc
tcctccggcaaggaaatcgaagcggcccgcaagtggatccactcgatcgtcgccgagccg
gaagtcggccagatctatgaaggcacggttgtgaagaccgccgacttcggcgccttcgtc
aacttcttcggcgcccgtgacggcctcgtccacatctcgcagctcgcttccgagcgcgtg
gcgaagacgcaggacgtcgtcaaggaaggcgacaaggtctgggtcaagctgctcggcttc
gacgagcgcggcaaggttcgcctctccatgaaggtcgtcgaccaggctactggccaggaa
atcgcggccgacaagaagaaggacgacgcggccgaataa
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