Rhizobium sp. 11515TR: CKA34_03980
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Entry
CKA34_03980 CDS
T06097
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rhr
Rhizobium sp. 11515TR
Pathway
rhr03030
DNA replication
rhr03410
Base excision repair
rhr03420
Nucleotide excision repair
rhr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CKA34_03980
03410 Base excision repair
CKA34_03980
03420 Nucleotide excision repair
CKA34_03980
03440 Homologous recombination
CKA34_03980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhr03032
]
CKA34_03980
03400 DNA repair and recombination proteins [BR:
rhr03400
]
CKA34_03980
Enzymes [BR:
rhr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CKA34_03980
DNA replication proteins [BR:
rhr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CKA34_03980
DNA repair and recombination proteins [BR:
rhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
CKA34_03980
NER (nucleotide excision repair)
GGR (global genome repair) factors
CKA34_03980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
HHH_2
HHH
IMS_HHH
RNase_T
Transposase_20
Motif
Other DBs
NCBI-ProteinID:
ASW05120
LinkDB
All DBs
Position
825062..828064
Genome browser
AA seq
1000 aa
AA seq
DB search
MKKGDHLFLVDGSGFIFRAFHALPPLTRKSDGLPVGAVSGFCNMLWKLLTSARDTSVGVT
PTHFAVIFDYSSKTFRKDIFPEYKANRSAPPEELIPQFGLIREATRAFNLPCIETDGFEA
DDIIATYARQAEAAGADVTIISSDKDLMQLVTPMVHMYDSMKDKQIGIPDVIEKWGVPPD
KMIDLQAMTGDSIDNVPGIPGIGPKTAAQLLEEFGDLDSLLARAGEIKQQKRRENIIANA
ELARISRQLVTLRTDVPLELALDALVLDPQDGPKLIGFLKAMEFTTLTRRVAEACDCDAA
AIEPSVVKIEWGEGAHGPDLDVGENVDLVAGSVVEAEGASVPAPSAKARLALDGTTAPED
LAKARAASFASAPIDHSKYVTIRDLATLDQWIADARETGIVAFDTETTSLDAMQAEIVGF
SLAIVDNRDDPTGASIRAAYVPLGHKTGVGDLLGGGLADNQIPLRDALPRLKDLLEDASI
LKIAQNLKYDYLLMKRYGIEMKSFDDTMLLSYVLDGGANATHGMDSLSERWLGHKPIAYK
DVAGSGKSNVTFDLVDIDRATAYAAEDADVTLRLWLVLKPRLAAEKLSAVYERLERPLVP
VLAHMEERGITIDRQILSRLSGELAQGAAALEDEIYNLAGERFNIGSPKQLGDILFGKMG
LAGGSKTKTGQWSTSAQVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPSYVHPETKR
VHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLVSADYSQIELRVL
AHVANIPQLKQAFEDGIDIHAMTASEMFGVPVDGMPSEVRRRAKAINFGIIYGISAFGLA
NQLSIERSEAGDYIKKYFERFPGIRDYMEGAKQAARDKGYVETIFGRRIHFPEIRSSNPS
VRAFNERASINAPIQGSAADVIRRAMIKMEPALASAGLSDRVRMLLQVHDELIFEVEDAD
VERTTPIIVSVMENAAMPAVDMAVPLKVDARAAHNWDEAH
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaggtgatcatctcttcctcgtcgacggctccggtttcatattccgggccttt
catgccctgccgccgctgacacgcaagtcggacggattgcctgtcggcgccgtctccggt
ttctgcaacatgctgtggaagcttttgacttcggcgcgcgatacctccgtcggagtgacg
ccgacccatttcgccgtcattttcgactattcttcgaagaccttccgtaaggacatcttc
ccggaatacaaggccaatcgctcggcgccgccggaagagctgatcccgcaattcggcctc
atccgcgaggcgacccgcgctttcaatctgccctgcatcgagaccgacggcttcgaggcc
gacgacatcatcgccacttacgcccgtcaggccgaggcagcgggcgccgatgtgacgatc
atctcgtctgacaaggatctgatgcaactcgtcacgccgatggtccacatgtatgacagc
atgaaggacaagcagatcggcattcccgatgtcatcgagaaatggggcgtgccgccggac
aagatgatcgacctgcaggccatgactggcgactcgatcgacaacgtccccggcattccc
ggcatcggcccgaagacggcggcgcagcttctagaagagttcggcgatctcgattccctt
ctcgcccgcgccggcgagatcaagcagcagaaacgccgcgaaaacattattgccaatgcc
gagcttgcccgcatttcgcggcagctggtgacgctaaggaccgatgtgccgctggaactt
gcgctcgatgcgctggtgctcgatccgcaggacggcccgaagctgatcggcttcctgaag
gccatggagttcacgaccctgacgcggcgcgtggcggaggcctgcgattgcgacgcggcg
gcaatcgagccctccgtcgtcaagatcgaatggggcgagggcgctcatggcccggatctc
gatgtcggcgagaatgtcgacctcgtcgccggtagcgttgtcgaggccgaaggggcatcg
gttccggcgccgtcggccaaggcgcgcctggctttggatggcaccactgcgcccgaggat
ctcgccaaggcgcgcgccgcaagtttcgcgagcgcgccgatcgaccattccaaatatgtg
accatccgcgatctcgcaacgctcgaccaatggatcgcggatgcgcgcgaaacaggtatc
gttgcctttgatactgaaacgacctcgctcgatgccatgcaggccgaaatcgtcggcttc
tcgctggcgatcgtcgataaccgtgatgatccgactggcgcgtccatccgcgccgcctat
gttccgctcggtcacaagaccggtgtcggcgatctgctcggcggcggcctggcggacaac
cagattccccttcgcgatgcactgccgcgcctgaaggatctgctggaggatgcctccatc
ctgaagatcgcgcagaacctgaaatacgactatcttctgatgaagcgttacggcatcgag
atgaagtcgttcgacgacactatgctgctctcctacgtgctcgatggcggcgccaatgcc
acgcatggcatggacagcctttcggagcgctggctcggccacaagccgatcgcctacaag
gatgtggccggcagcggcaagtccaacgtcaccttcgatctcgtggatatcgatcgcgcc
acggcctatgctgctgaagatgccgatgtaacgctgcgtctctggctggtgctgaaacca
cgacttgcggcagaaaaactctcggccgtctacgagcggttggagcggcctctggtgccg
gtgcttgcccatatggaagagcgcggcatcaccatcgaccggcagatcctctctcgcctt
tccggcgagctggcgcagggcgccgccgccttggaagacgagatctacaatctggctggc
gagcgcttcaatatcggctctccgaagcagctcggcgatatccttttcggcaagatggga
ttggccggcggcagcaagaccaagaccgggcaatggtccacctcggcgcaggtgctggaa
gatctggcggcggccggcttcgaactgccgcgcaagattgtcgactggcgccagctcacc
aagctgaaatcgacctatacggatgcgctgccgagctacgtccatcccgagacgaagcgc
gttcacacctcctattcgctggcatcgaccacgacggggcgcctgtcctcctccgagccg
aacctgcagaatattccggtgcgcacggcggaaggccgcaaaatccgcacggctttcatt
tcaacgccgggccacaagctcgtctcggcagactacagccagatcgaactgcgcgtgctg
gcgcatgtcgccaatattccgcagctcaagcaggccttcgaagacggcatcgacattcac
gccatgacggcctccgaaatgttcggcgtgcctgtggatggcatgccgagcgaagtgcgc
cgtcgtgccaaggcgatcaacttcggcatcatctacggcatctccgccttcggtctcgcc
aaccagctctcgatcgagcgctcggaagccggcgactacatcaagaagtatttcgagcgc
ttcccgggtattcgcgactatatggagggcgccaagcaggccgcgcgcgacaagggctat
gtcgagacgatcttcggtcgccgtatccatttccccgaaatccgctcgtccaatccctcc
gtccgtgccttcaacgaacgcgcttcgatcaacgccccgatccagggatcggccgccgac
gtcatccgccgcgccatgatcaagatggagccggcactggcttcggctggcctcagcgat
cgcgttcgcatgctgctgcaggtgcacgacgaactgatcttcgaagtcgaggatgccgat
gtcgagcgcaccacgccgatcatcgtctcggtcatggaaaacgccgccatgccggcggtc
gatatggccgtgccgctgaaagtcgatgcgcgcgctgcgcataattgggatgaggcgcac
tga
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