Rhizobium sp. 11515TR: CKA34_04855
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Entry
CKA34_04855 CDS
T06097
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
rhr
Rhizobium sp. 11515TR
Brite
KEGG Orthology (KO) [BR:
rhr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rhr03016
]
CKA34_04855
Enzymes [BR:
rhr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
CKA34_04855
Transfer RNA biogenesis [BR:
rhr03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
CKA34_04855
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
DOPA_dioxygen
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
ASW05275
LinkDB
All DBs
Position
complement(1001769..1002386)
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AA seq
205 aa
AA seq
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MKNNGQLSLYLAGGSHTRAPPPIDQGPVNEFYFALLPDAAIATYSHELAGNFRRQYRFST
KPRRPDLFHVTLYPIGSFRCLPEDVAFAAMEAASRVRKSPFPVVFDRAVSFGKGDNRPLV
LWNKDGNAELRALHQELADAMRLTGIEPTKEKPVEPHMTLLYQGHLVADIMLEEPVSWTA
RDFVLINSLQGEAKHDHLCYWTLHD
NT seq
618 nt
NT seq
+upstream
nt +downstream
nt
atgaagaataatgggcagctttcgctctatctcgcaggcggatcacacacgcgagcacca
ccgccaatcgatcaagggcctgtcaacgagttctatttcgcgctcctgcccgatgcggcg
atcgccacgtacagccatgaattggctggaaattttcgcaggcagtaccgcttttccacg
aagccgcgtcggcctgatctcttccatgtgacgctctacccgatcgggtcgtttcgctgc
ttgcccgaggacgtggcatttgcggcgatggaagcggcctcgagggtgaggaaatcaccc
tttcccgtcgtcttcgatcgggctgtcagcttcggcaagggcgacaaccgcccgctggtc
ctatggaacaaggacggcaatgcggaactaagggcgctccatcaggagctggccgatgcc
atgcggctcacgggcattgagccgactaaggaaaaacctgtcgagccgcatatgacgctg
ctctatcagggccatctcgttgccgacatcatgctcgaggagcccgtaagctggaccgcc
agagacttcgttctcatcaacagcctgcagggagaggccaagcacgatcatctctgctat
tggactttgcatgattga
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