Rhizobium sp. 11515TR: CKA34_05280
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Entry
CKA34_05280 CDS
T06097
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rhr
Rhizobium sp. 11515TR
Pathway
rhr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CKA34_05280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhr03400
]
CKA34_05280
Enzymes [BR:
rhr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CKA34_05280
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CKA34_05280
DNA repair and recombination proteins [BR:
rhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CKA34_05280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Rv2993c-like_N
Motif
Other DBs
NCBI-ProteinID:
ASW05353
LinkDB
All DBs
Position
1080314..1081204
Genome browser
AA seq
296 aa
AA seq
DB search
MPELPEVETVRRGLAPSMEGAVLKELELRRNDLRFPFPADFAEAVSGRGIASLSRRAKYL
LIDLDDGQTIVAHLGMSGSFRIEAGREAQMPGEFHHPRSKDEKHDHVVFHLAGAGGDARV
IYNDPRRFGFMDMVRRAEMANHPFFRDLGPEPTGNELDADYLAKRFAGKAQPLKSALLDQ
KNIAGLGNIYVCEALWRSHLSPLRAAGTLVTDAGKPTEALLALVEAIREVIADAIAAGGS
SLRDHIQTDGSLGYFQHSFSVYDRESQPCGTPGCGGTVSRIVQAGRSSFYCASCQG
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattaccagaggtcgaaaccgtcagacgaggccttgcgccttccatggaaggt
gcggttctcaaggaattggagctgcgccgcaacgatctgcgctttcctttccccgccgat
ttcgctgaggccgtttcgggccgcggcatcgcgtcgctgtcgcgccgcgccaaatacctg
ctgatcgatctcgacgatggccagacgatcgtcgcgcatctcggcatgtccggttcgttt
cggattgaagccggtcgggaggcgcaaatgccgggcgaatttcatcatccccgttccaag
gacgagaagcacgatcatgtagtcttccatctggcgggcgccggcggtgatgcgcgcgtc
atctacaatgacccgcgtcgctttggcttcatggacatggtccggcgcgccgagatggcc
aaccatcccttcttccgtgatctcgggcctgaacccacgggcaatgaactcgatgccgat
tatctggctaagcgtttcgccggcaaggcgcagccgctgaagagcgcgctgctggatcag
aagaacattgccggtctcggcaatatatatgtatgtgaagcattgtggcgctcccacctg
tcgccattgcgcgccgccggcacgctggttacggatgcgggcaaaccgacagaagcgctg
ctggcgctggtcgaggcgatccgcgaggtcattgccgatgcgatagccgcaggcggctcg
tcgctgcgtgaccatatccagacggacggttcgctcggctatttccagcattccttttcc
gtctatgatcgtgaaagccagccttgcggtacgcccggttgcggcggtacggtcagtcgc
atcgtccaggcggggcgctcttctttctactgcgcttcctgccaaggctga
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