Rhizobium sp. 11515TR: CKA34_06225
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Entry
CKA34_06225 CDS
T06097
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhr
Rhizobium sp. 11515TR
Pathway
rhr03420
Nucleotide excision repair
rhr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CKA34_06225
03430 Mismatch repair
CKA34_06225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhr03400
]
CKA34_06225
Enzymes [BR:
rhr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CKA34_06225
DNA repair and recombination proteins [BR:
rhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CKA34_06225
MMR (mismatch excision repair)
Other MMR factors
CKA34_06225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
HHH
RecR_HhH
HHH_5
AAA_12
DEAD
Motif
Other DBs
NCBI-ProteinID:
ASW05517
LinkDB
All DBs
Position
complement(1271194..1273260)
Genome browser
AA seq
688 aa
AA seq
DB search
MTAAYLEKLNPEQRLAVEHGTSGDGHIAGPLLVIAGAGSGKTNTLAHRVAHLIVRGADPR
RILLMTFSRRAAAEMGRRVERICREVLGANAGINADTLAWSGTFHGIGARLLRDYAEQIG
IDPAFTIHDREDSADLMNLARHDLGFSKTENRFPTKATCLAIYSRSVNAEAPLDGVLRDY
FPWCATWEQQLRDLFASYVEAKQTQNVLDYDDLLLYWAHMLQEPLIAEDIGSRFDHVLVD
EYQDTNRLQSSILLALKPDGRGLTVVGDDAQSIYSFRAATVRNILDFPKAFTPSADIVTL
DRNYRSTQPILAAANAVIDLASERFTKNLRTERQSTERPRLVTVRDEADQARYIADQILE
NREGGVRLKQQAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAALRFAQ
NPRDRVAGFRLMQLLPGVGPSTAQRILDQIGEEASPITALTELPPPPRTGDDWTAFVETM
REIKSGKAGWPAEIGLVRQWYEPHLERAHEDAATRQADLVQLEQIAAGYGSRERFLTELT
LDPPDATSDQAGVPLLDEDYLILSTIHSAKGQEWTKVFILNAVDGCIPADLAVGSSAEIE
EERRLLYVAMTRAKDNLDLVIPQRFFVHGQHAQGDKHVFASRTRFIPATLLQFFEVCGWP
QARAESAAAIRAREVRVDVSARMRGMWR
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgcctatctggaaaagctgaacccggagcaacggctggcggtggaacatggc
acgagcggtgacggccatattgccggcccgttgctcgtcattgccggggccggctccggc
aagacgaatacactcgcccatcgcgtcgcgcatttgatcgtgagaggtgcggacccgcgc
cgcatcctgttgatgaccttctcgcgccgcgctgccgccgagatgggccgtcgcgtcgag
cggatctgccgcgaggtgctgggcgcgaatgccggcattaacgccgacacactcgcatgg
agcggcacgttccacggcatcggcgcacgtctgctcagggactatgccgagcagatcggc
atcgatccggccttcacgatccacgatcgggaagacagcgccgacctgatgaatcttgcg
cgccatgacctcggcttctcgaagacggagaaccgcttcccgaccaaggcgacatgcctc
gccatctattcacgctcggtcaatgcggaagcgccgctcgacggcgtgctgcgggattac
ttcccgtggtgcgccacgtgggagcagcagctacgcgatcttttcgcctcttacgtcgag
gcgaaacagacgcagaacgtgctcgattacgatgacctgctgctctattgggcgcatatg
ctgcaggagccgctgatcgctgaggatatcggcagtcgcttcgaccatgtgctcgtcgac
gaatatcaggacacaaaccggctgcagtcctccattctgctggctctcaagcccgatggt
cgcgggctgaccgtcgtcggtgacgatgcgcagtcgatctattccttccgcgccgcgacc
gtgcgcaacattctcgacttcccgaaagccttcacgccctcggccgatatcgtgacgctc
gaccgcaattaccgctcgacgcagccgatccttgctgccgccaacgccgtgatcgatctc
gcctcggagcgcttcaccaagaacctgcgcaccgagcggcaaagcacggaacggccgcgg
ctggtgacggtgcgcgacgaggccgatcaggcgcgctacatcgccgaccagatactggaa
aatcgcgagggcggcgtaaggctgaagcaacaggcagtgctattccgcacctccagccat
agcgggccgctggaagtggaactcacccggcgcaacattcccttcgtcaagttcggtggg
ctgaaattcctcgacagcgcccatgtcaaagacatgctggcggcgctgcgcttcgcccag
aacccgcgcgatcgcgtggcgggcttccgcctgatgcagctcctgcccggcgtcgggcct
tccaccgcgcagcgcatactcgaccagatcggcgaagaggcaagcccgatcacggcgctc
accgaactcccgccgccgccgcgcacgggggacgactggaccgcctttgtcgagacgatg
cgggagatcaaaagcggtaaggccggatggccggcggaaatcggcctggttcgccaatgg
tatgagcctcatctggagcgcgcgcatgaagatgccgcgacccgccaggccgatctcgtc
cagctcgaacagatcgccgccggttacggctcgcgcgagcgtttccttacggagctgacg
ctcgatccaccggacgccaccagcgaccaggccggtgtgccgctgctcgacgaagactat
ctgatcctatcaaccatccattccgccaagggccaggaatggacgaaggtcttcatcctc
aacgccgtcgacggctgcattcccgccgatctcgcagtcggatcatcggctgagatcgag
gaggaacggcggctgctctatgtcgcgatgacgcgggcgaaggacaatctcgatctcgtc
attccgcagcgcttcttcgtgcacggccaacatgcgcagggcgacaagcatgtcttcgcc
tcgcgcacccgcttcattcccgccacgttgctgcagttcttcgaggtttgcggctggccg
caggcgcgcgccgagagcgccgccgccatccgggcgcgagaggtgcgcgtcgatgtgagc
gcgcggatgcggggcatgtggcgatga
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