Rhizobium sp. 11515TR: CKA34_10090
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Entry
CKA34_10090 CDS
T06097
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rhr
Rhizobium sp. 11515TR
Pathway
rhr03030
DNA replication
rhr03430
Mismatch repair
rhr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CKA34_10090
03430 Mismatch repair
CKA34_10090
03440 Homologous recombination
CKA34_10090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhr03032
]
CKA34_10090
03400 DNA repair and recombination proteins [BR:
rhr03400
]
CKA34_10090
Enzymes [BR:
rhr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CKA34_10090
DNA replication proteins [BR:
rhr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CKA34_10090
DNA repair and recombination proteins [BR:
rhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CKA34_10090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
ASW06199
LinkDB
All DBs
Position
2070885..2074379
Genome browser
AA seq
1164 aa
AA seq
DB search
MADAGGSGAVAPVGEMPEFVHLRVHSAYSLLEGALPLKKILAKAAGDSQPAIAITDTNNL
FVALEFSQKAMDEGLQPIIGCQVSIDMEDGGEGEKRGPQQALAKLPSIVLLAATEQGYER
LVDLVSRAYLGGEGNHAVHIAASWLDEIGTEGLIALTGSLTGPVDMALKEGHAPQALSRL
LTLKRLFGDRLYVELQRHGTYDRRHEQKMIAMAYEHEIPLVATNEAFFPTRDDYDAHDAL
MAVAHNAIVSDDTRFRLTPDHYLKSRADMAKLFANLPEALENTVEIARRCSFILKTRKPI
LPRFTGATDDAEEAERAEAAELRAQAIEGLDQRLVSLGMAPGYAEKDYRERLEFELSVIE
RMKFPGYFLIVADFIKWAKRHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLN
PERVSMPDFDIDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPY
GQVDKICKLVPNNPANPTPLSKAIEEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTH
AAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDF
VAKRGISIDLASIPLDDKLSYEMLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVA
LYRPGPMENIPVYNARKHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQVAQVLSGYSLG
EADLLRRAMGKKIKAEMDQQRERFVDGAIKNGVSKGQADVIFDLLAKFANYGFNKSHAAA
YAIVSYQTAYMKAHYPVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHF
ETGDNRIYYALAAIKGVGESAVDHIVEVRGDKPFAGIEDFCLRIDPKQINRRVLESLICA
GAFDCFEIDRAQLIAGLDRIMGYAQVAQENKRSGQHDMFGSAASGPEKIVFPPYTPWLAS
ERLLREFQVLGFYLTAHPLDTYKSVLDKMRVQPFAEFSAAVKQGASNGRLAGTVISKQER
KTRTGNKMGIFVFSDASGQFEAVLFSETLNQYRDVLEVGKSFVITAQADERPEGISLRLQ
TAQSLEEKSLQMQKALRVYVRDSGPLKAVAAHLNAKGDGLVSFIVIKEEGMREVEVALPE
KYRITPEIAAALRTAPGVIDVELV
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcaggtggcagcggcgcggtagcgccggtcggcgaaatgccggaattcgtg
cacctcagggttcattccgcctattctctactagagggcgcattgccgctcaagaagata
ttggccaaggctgccggggacagtcagccggccattgccatcaccgataccaacaatttg
ttcgttgccctggagttctcgcagaaagcgatggacgaggggctgcagccaatcatcggc
tgtcaggtatcgatcgatatggaagacggcggcgagggcgagaagcgcgggccgcagcag
gccttggcgaagctgccatccatcgtgctgcttgccgccaccgagcagggctacgagcgc
ctcgtcgatcttgtcagccgcgcctatctcggcggcgaaggcaatcatgccgttcacatt
gcagcctcatggctggacgagatcggcacggaagggttgatcgcactcaccggttcgctg
accggcccggttgacatggcgttgaaggaaggccatgcgccgcaggcgctatcccgtctg
ttgacactgaaacgcctgttcggcgacaggttgtatgtcgaattgcagcgtcatggcacc
tatgatcgccgccacgagcagaagatgatcgcgatggcttacgagcatgagattccgctc
gtcgccaccaacgaagccttttttccgacgcgggacgattatgatgcgcatgacgctctg
atggcggtggcccacaatgccattgtctcggacgatacgcggttccgcctgacgccggat
cattatctcaagagccgtgccgacatggcgaaactcttcgccaatctgcccgaagcgctg
gagaacacggtcgagatcgcccgccgctgctccttcatcctgaagacccgcaagccgatc
ctgccgcgcttcactggcgccacggatgatgcggaggaggcagagcgtgccgaggccgcc
gagctgcgcgctcaggcgatcgagggtctcgaccagcgtctcgtctcgctcggcatggca
ccgggctatgcggagaaggattatcgcgagcggctggaattcgaactgagcgttatcgag
cgcatgaagtttcccggctacttcctgatcgttgcggacttcatcaaatgggccaagcgc
cacgatatccccgtgggcccgggccgcggttccggtgcgggctcgctggtcgcctatgct
ctgaccatcaccgacgtcgatccgctgcgcttttcgttgctgttcgagcgcttcctcaat
ccggaacgcgtctccatgccggactttgatattgatttctgccaggaccggcgcgaagag
gtgatccgttacgtgcaggccaaatatggccgcgagcaggtggcgcagatcatcaccttc
ggttcgctgcaggcgcgcgcagccttgcgcgacgtcggccgcgtgctcgaaatgccctat
ggccaggtcgacaagatctgcaagctggtgccgaacaatcccgccaatcctacgccgctg
agcaaggcgatcgaggaggagccgcgtctgcaagaagaggcggacaaggagccggtcgtc
gcccggcttctcgacatcgcgcagaagattgaaggcctctatcgccacgcctcgacgcac
gccgccggtatcgtcatcggcgaccgtccgctgtcgaagctcgtgccgatgtatcgcgac
ccgcgctccgacatgccggtcacccagttcaacatgaaatgggtggagcaggccggtctg
gtgaagttcgacttcctcggcctgaagacactgactgtcctgaagacggcggtcgatttc
gttgctaagcgcggcatctcgatcgatcttgccagcataccgcttgacgacaaattgagc
tatgagatgctctcgcgcggcgagacggtcggcgtgttccaggtggaaagtgcgggcatg
cgcaaggcgctgatcggcatgcgtcctgactgcatcgaggatatcatcgcgctcgtggcg
ctctatcgtcccggcccgatggagaacatcccggtctataatgcccgcaagcacggcgag
gaggagatcgaatcgatccacccgaagatcgactatcttctcaaggaaacccagggcgtt
atcgtctaccaggaacaggtgatgcaggtcgcccaggtgctctcgggctattcgctcggc
gaggcggatcttctgcgccgcgccatgggtaagaagatcaaggcggagatggaccagcag
cgcgagcgcttcgtcgatggcgccatcaagaacggcgtttcgaagggccaggccgacgtc
atcttcgatctgctcgcgaaattcgccaattacggcttcaacaagtcgcatgccgccgcc
tacgcgatcgtctcctaccagaccgcctatatgaaggcacactatccggtggagttcctg
gccgcgtcgatgacgctcgatatgtccaacaccgaaaaggtcaacgacttccgtcaggat
gccaagcggctgggcatcgaggtcatcgcgccctcggtgcagacctcgttccgccatttc
gagacgggtgataaccgtatctattatgctctggccgccatcaagggtgtcggcgaatcc
gctgtcgaccatatcgtcgaggtgcgcggcgacaaaccctttgccggcatcgaggatttc
tgcctgcgcatcgatcccaagcagatcaaccgtcgcgttctggaaagcctgatctgtgcc
ggcgctttcgattgtttcgagatcgaccgcgcccagctgatcgccggcctcgaccgtatc
atgggctatgcccaggtggcgcaggaaaacaagcgcagtggccagcatgacatgttcggg
agtgcagcctccggtccggaaaagatcgtgtttccgccctatacgccatggctcgcctcg
gagcgtttgctgcgcgagttccaagtgctcggcttctatctgacggcacatccgctcgat
acttataagagcgtgctcgacaagatgcgggtgcagccgttcgccgagttctccgccgcc
gtaaagcagggcgccagcaacggccgtctcgctggcacggttatctccaagcaggagcgc
aagacgcgtaccggcaacaagatgggcatcttcgttttctccgatgcttcgggccagttc
gaagccgtgctcttctcggagacgctcaaccagtatcgtgatgtgctcgaagtcggcaaa
tccttcgtcattacggcccaggcggacgagcgcccggaaggcatcagcctgcgcctgcag
acggcgcagtcgctggaggagaagtcgctgcagatgcagaaggcgctgcgcgtctatgtc
cgcgattctggcccgctgaaagccgttgccgcgcatcttaacgccaagggcgatggcctt
gtttcctttatcgtcatcaaggaggaaggaatgcgcgaggtcgaggtggcactgccggag
aaatatcgtatcacgcccgaaatcgctgctgccttgcgcacggcacccggcgtgatcgac
gtggagctggtttga
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