Rhizobium sp. 11515TR: CKA34_11790
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Entry
CKA34_11790 CDS
T06097
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rhr
Rhizobium sp. 11515TR
Pathway
rhr03410
Base excision repair
rhr03430
Mismatch repair
rhr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CKA34_11790 (recJ)
03430 Mismatch repair
CKA34_11790 (recJ)
03440 Homologous recombination
CKA34_11790 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhr03400
]
CKA34_11790 (recJ)
DNA repair and recombination proteins [BR:
rhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CKA34_11790 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CKA34_11790 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CKA34_11790 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Peripla_BP_4
Motif
Other DBs
NCBI-ProteinID:
ASW08127
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Position
2376700..2378502
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AA seq
600 aa
AA seq
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MEQPVDPVQRAFLGVERSVSGNRWVSRLDQAGQNRALAIAQTHGLPELIARVLAGRGVGQ
DEAMAFLDPTIRGLMPDPHLLTDCEKAAQRLLHAIRKGETVAIFGDYDVDGAASSALLYR
FLTHFGVPASIYIPDRIFEGYGPNPTAINQLIDNGATLIVTVDCGSTSFESLDAAKARNI
DVVVIDHHQVAHELPHCHALVNPNREDDLSGQGHLCAAGVVFMVLVAALRLLREVGDSRV
RSIDLLAWLDIVALATVCDVVPLKGLNRAYVVKGLIAARHQGNLGLAALFRKAGLNGPVT
PYHFGFLIGPRINAGGRIGDAALGARLLTLAEGGEADTIAAKLDELNRERQAMEAAMLQE
AEAEALAEYGNGDGASVIVTARENWHPGIVGLIASRLKDKFRRPAFAIAFDPMGKGTGSG
RSINGFDMGRMVRAAVDAGLLVKGGGHAMAAGLTVERSNLGKLRAFFTENAEKQVAGLVA
NETLKIDGALGASGATVELIDRLETAGPYGSGHPQPVFALPSHRLRDSRLVGQSHIKITL
EAQDGGRVDGIAFRAAETPLGDLLMSSRGAQIHVAGTLGADHWQGSRRVQLRVTDAAKAP
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
gtggagcaaccggtcgatccagttcagcgggcatttctgggtgtcgagcgctcggtatca
ggcaatcgctgggtatccaggctcgatcaggccggccagaacagggcgctcgccattgcg
cagacgcatgggctgccggagctgattgcccgcgtgcttgcagggcgcggcgtcgggcag
gacgaagccatggctttcctcgacccgacgatccgcggcctgatgccggacccgcatttg
ctgaccgattgcgagaaggcagcgcagcgcctcctgcacgccatcaggaagggcgagaca
gtcgcgatcttcggcgactatgatgtcgacggcgcggcctcctcggcgttgctctatcgc
ttcctcacccatttcggcgttcccgccagcatctatattcccgatcgcatcttcgaaggt
tacgggcctaatcctaccgccatcaatcagctgatcgacaatggcgcgacgctgatcgtg
accgtcgattgcggctccaccagcttcgaatcgcttgatgcggcaaaggcgcgcaatatc
gacgtcgtcgtcatagatcaccaccaggtggcgcacgagctgccgcattgtcatgccttg
gtcaatccgaaccgtgaggatgatctttcggggcaggggcatctctgtgccgctggcgtg
gtcttcatggttctggtcgcggcgttgcggctgctgcgggaggtcggtgattcccgtgtg
cgttcgatcgacctgcttgcctggctcgatatcgttgcgctcgcgaccgtctgcgatgtc
gtgccgctgaagggcctcaaccgcgcctatgtcgttaaggggctcatcgctgcccgccat
cagggcaatcttgggctcgcagcgctgtttcgcaaggccggtctcaatggtcccgtcacg
ccctatcatttcggcttcctgatcggtccgcgcattaatgccggcggccgcatcggcgat
gcagcccttggcgcacgcctgctgacgctggccgaagggggcgaagccgacacgatcgcc
gcgaagctggatgagctcaatcgtgagcggcaggccatggaagccgccatgctgcaggag
gccgaggccgaggccctggcggaatatggcaatggcgacggcgcctccgtcatcgttaca
gcacgcgagaactggcatccgggaatcgtcggcctcattgcatcgcgtctcaaggacaaa
ttccgccggccggccttcgccatcgccttcgatccgatgggcaagggcacaggctccggc
cgctctatcaatggcttcgacatgggccgcatggtgcgtgccgccgtcgatgccggtctg
ctggtcaaaggcggcggccatgccatggcagccggcctgactgtggagagaagcaacctc
ggaaagctgcgggctttcttcacggagaacgcggagaagcaggtagccggactcgttgcc
aacgaaacgctgaagatcgacggtgcgctcggcgcaagcggcgcgaccgtggaattgatc
gacaggctcgagaccgccggtccctatggttcgggccatccacagcccgtcttcgcgctt
ccgagccatcgcctgcgcgattcccgccttgtcggccagtcgcacatcaagatcacactg
gaggcgcaagatggcggccgggtggatggcattgccttccgcgcggcggagacgcccttg
ggcgatctgctgatgtcatcgcgcggcgcacagatccatgtcgccggcacgctcggcgcc
gaccactggcagggtagccgtcgtgtgcagctgcgcgttacagatgcggcgaaagctccg
taa
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