Rhizobium sp. 11515TR: CKA34_12325
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Entry
CKA34_12325 CDS
T06097
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rhr
Rhizobium sp. 11515TR
Pathway
rhr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CKA34_12325 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhr03400
]
CKA34_12325 (mfd)
Enzymes [BR:
rhr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CKA34_12325 (mfd)
DNA repair and recombination proteins [BR:
rhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CKA34_12325 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASW06594
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All DBs
Position
2483518..2487018
Genome browser
AA seq
1166 aa
AA seq
DB search
MIPGFDAKKLLAASEPMTIGHVPAGLEPFLIAEMAKAGQPTAYVMSDGQHMADVEQMLGF
IAPEIPVLTLPAWDCLPYDRVSPSSDTSARRLAALSGLIAHYRKPHAAIVLVTVNAMLQK
VAPQDIIESLAFSARPGNQVRMDDIAARLERNGFDRVATVREVGEYAVRGGILDVFVPGT
EEPVRLDFFGDTLESIRSFDPASQRTTGQVRSLDLNPMSEVTLTPDTISRFRKNYLSAFG
AATRDDALYLAVSEGRRYAGMEHWLPLFYEKLETVFDYLKGFRLVTDHTVREAAEERSKL
VFDYYDARLHSGQQTKGQMTQGTPYKPVTPGQLYLDGKAFGNALDAFGAIRISPFNEHEG
EARRVIELDARQGPRWARSATDTADSERVNVFDAVVKHIADKRAAGGKVLISAWTEGSLD
RLLQVLSEHGLARVKTIEAFKDISGLAKGEAAAAVLSLEAGFETGDLIVIGEQDILGDRM
VRRSKRRKRAADFISEVAGLDEGSIVVHAEHGIGRFVGLRTIEAAGAPHACLELHYADDA
KLFLPVENIDLLSRFGGEGTEAQLDKLGGGAWQMRKAKLKKRLLDIAGDLIRVAAERLTR
HAPVLTSPEGLYDEFAARFPYDETDDQMNAIEAVREDLGAGRPMDRLVCGDVGFGKTEVA
LRAAFVAAMNGVQVAVVVPTTLLARQHFKTFSERFRGLPIRVQQASRLVGAKDLALTKKE
VAEGKTDIVVGTHALLGAGIQFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATP
IPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLVIRETLMREHYRGGQSFYVCPR
LADLADIHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVP
TANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTTTAERRLKVLQSLDT
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIQDTGWS
PQISVGTPVMIPDDYVPDLHLRMALYRRLGEITELKEIDSFGAEMIDRFGPLPIEVQHLL
KIVYIKSLCRIANVEKLDAGPKGVVVQFRNKEFPNPANLVGYIAKQGTMAKIRPDQSVFL
TRDLPTPEKRLQGAAVVMTQLAELAK
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgatccccggtttcgatgcgaagaagctgctcgccgccagcgagccgatgacgatcggt
catgttccggccggcctggagccattcctgattgccgaaatggcaaaggccggccagccg
accgcctatgtcatgtctgacggtcagcatatggccgatgtcgaacagatgctcggcttc
atcgcgcccgaaatcccggttctcactctacctgcctgggattgtcttccctacgaccgc
gtttccccgagttccgatacctcggcgcggcgcctggcggctttgtccggcctgatcgcg
cattatcgcaagccgcatgcggcgatcgtgttggtgaccgtcaatgccatgctgcagaag
gtagcgccgcaggacattatcgagagtctggccttttcggcgcgaccaggcaaccaggtc
cggatggacgacatcgcggcgcgcctggagcgtaacggtttcgatcgcgtcgcgaccgtg
cgcgaggtcggcgaatatgctgttcgcggcggcattctcgacgtcttcgttccgggcacg
gaagagccggtacgcctggatttcttcggcgatacgctggagagtatccgcagcttcgat
ccggcaagccagcgcacgacggggcaggtgcgttcgctcgatctcaatccgatgagtgaa
gtgacgctgacgccggatacgatcagccgcttccgcaagaattatctctccgccttcggc
gccgccacgcgcgacgatgcgctctatcttgccgtctccgaaggtcggcgatacgccggc
atggaacattggctgccgctcttctacgagaagctggagactgttttcgattacctcaag
ggcttccggctggtgacggatcacaccgtgcgggaggcggccgaggagcggtccaagctc
gtcttcgactattacgatgcccgcctgcattccggccagcagaccaaggggcagatgacg
cagggcacgccctataaaccggtcacgccgggccagctgtatctcgacggcaaggccttc
ggcaatgcactcgatgccttcggcgccatccgcatctcgcccttcaacgagcatgagggc
gaggcccgccgcgtcatcgagcttgatgcccgccaggggccgcgctgggcgcggtcagcg
actgacacggccgatagcgagcgcgtcaacgtcttcgatgcggtcgtcaagcatattgcc
gacaagcgggcggcgggcggcaaggtgctgatttcggcctggaccgaaggttcgctcgat
cgcctcctgcaggtgctttccgaacacgggttggcgcgcgtcaagacgatcgaggccttc
aaggatatcagcggtctggcgaagggcgaggcggctgccgccgtactcagcctcgaagcc
ggtttcgagaccggcgatctgatcgtcatcggcgagcaggatattctcggcgaccgcatg
gtgcgccgctccaagcgccgcaagcgcgccgctgatttcatctctgaagtggcaggcctg
gacgaaggctcgatcgtcgttcacgccgagcatggcatcggccgtttcgttggcctcagg
accatcgaggctgccggtgcaccgcatgcctgcctcgagctgcattatgccgacgatgcc
aagctgttcctgccggtcgaaaacatcgatctactctcgcgctttggcggcgagggcact
gaggcgcagctcgacaagctcggcggcggcgcttggcagatgcggaaggcgaagctcaag
aagcgccttctggatatcgctggtgacttgatccgtgttgcggccgagcgcctgacgcgc
catgcgccggtgctgacctctcccgaagggctctacgacgaattcgccgcgcgcttcccc
tatgatgagaccgacgatcagatgaacgccatcgaggcggtgcgcgaggatcttggcgcc
ggccggccgatggatcgccttgtctgtggcgacgtcggcttcggcaagacagaggtggcg
cttcgtgctgccttcgtcgctgccatgaacggcgtgcaggtcgctgtcgtggtgccgacg
accttgcttgcccggcagcatttcaagaccttttccgagcgtttccgcggcctgccgatc
cgggtacagcaggcatcccgcctggttggcgccaaggatctggcgctgaccaagaaggaa
gtcgccgaaggcaagacggatatcgtcgtcggcacgcatgcgctgctcggcgccggcatc
cagttcgccaatctcggcctgcttatcatcgatgaggagcagcatttcggcgtgaagcac
aaggagcgcctgaaagagctgaagagcgacgtgcatgtgctgacgctctccgccacccca
atcccgcgcactttgcagctcgcgatgaccggcgtacgcgaactgtcgctcatcaccacg
ccgccggtcgaccgcatggcggtgcgcaccttcatttctcctttcgattcccttgtgatc
cgcgaaacgctgatgcgcgagcattatcgcggcggccagagcttctatgtctgtccgcgt
ctcgcagatctcgccgatatccacgccttcctgcaatccgatgtgccggagctgaaggta
gcggtcgcccatggccagatgccggccggcgaactggaagacatcatgaacgccttctac
gaaggccgctatgatgtgctgctgtcgacgaccatcgtcgaatccggcctcgacgtgccg
acggccaatacgttgattgtccatcgcgctgatatgttcggcttggcccagctctatcag
ctccgcgggcgcgtcggccgttcgaaagtgcgcgcctttgcgctcttcacgctgccggtc
aacaaggttctgacgacgacggcggagcgccggctgaaagtactgcagtcgctggacacg
ctcggcgccggcttccagctggcaagccacgatctcgatattcgcggcgccggcaatctg
ctgggcgaggaacagtccggccatatcaaggaagtcggcttcgagctctaccagcagatg
ctcgaggaggctgtcgccgaggtcaagggcgtcgacgaaatccaggataccggctggtcg
ccgcagatctccgtcggcacgccggtcatgatccccgatgattatgtgcccgacttgcat
ctgcgcatggcgctctatcgccgcctcggcgagattaccgagctgaaggaaatcgacagt
ttcggtgccgagatgatcgaccggttcggcccgttgccgatagaggtgcaacacctcctc
aagatcgtctacatcaagtcgctctgccgcatcgccaatgtcgagaagctcgacgccggc
ccgaagggtgtcgtcgtacagttccgcaacaaggaattcccgaacccggccaacctagtc
ggctacatcgccaagcagggcaccatggcaaagatccgccccgaccagagcgtgttcctg
acccgcgacctgccgacaccagagaagcggctgcagggtgcggccgtggtcatgacgcaa
ctggcggaattggcgaaatag
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