Rhizobium sp. 11515TR: CKA34_14580
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Entry
CKA34_14580 CDS
T06097
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhr
Rhizobium sp. 11515TR
Pathway
rhr03420
Nucleotide excision repair
rhr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CKA34_14580
03430 Mismatch repair
CKA34_14580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhr03400
]
CKA34_14580
Enzymes [BR:
rhr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CKA34_14580
DNA repair and recombination proteins [BR:
rhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CKA34_14580
MMR (mismatch excision repair)
Other MMR factors
CKA34_14580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ASW08164
LinkDB
All DBs
Position
2952868..2955333
Genome browser
AA seq
821 aa
AA seq
DB search
MTIGHDDIPFFDEEPEHMAPRRSAPAAGSIGGGIAARAMAARDSGRRPDYLSGLNAEQAE
AVETLDGPVLVLAGAGTGKTRVLTTRIAHILSTNRAFPSQILAVTFTNKAAREMKERIAL
LVGGAVEGMPWLGTFHSIGVKLLRRHAELVGLTSSFTILDTDDVIRLIKQLIQAEGLDDK
RWPAKQFAGMIDTWKNKGLSPADIPEGDARAFANGKGRELYAAYQNRLKTLNACDFGDLL
LHPINMFRQNPDILKDYHQRFRYILVDEYQDTNTAQYMWLRLLAQRQKGEPQNVCCVGDD
DQSIYGWRGAEVDNILRFEKDFPGAKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLF
TDRSDPDDIKVQVHASWDSEEEARAIGEEIEQLQRNKHNLNDIAILVRASFQMREFEDRF
VTLGLNYRVVGGPRFYERLEIRDAMAYFRLVCQPADDLAFERIINTPKRGLGDTTVRALH
DYARVRDIPMLAAAADIIETDEMKPKARKALFDVVQSFRRWQGLLENTPHTELAEQILEE
SGYTDMWKNDKSAEAPGRLENLKELIRSMDSFESMRGFLEHVALVMDAEQNENLDAVSIM
TLHSAKGLEFDTVFLPGWEEGLFPHQRSLDESGRAGLEEERRLAYVGITRAKRRCHIWFV
SNRRIHGLWQSTIPSRFLDELPETHVQVAEVEQSYGGYGRGGYGQSRFDKADPFANTYST
PGWKRAQANRNDATRDNWGSRSGHAVERIGYGESGPKVRTIDGELVAKSTSTEPSKFAIG
DRVFHIKFGNGNVSEIEGNKLTIEFDRAGQKRVLDGFVERV
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgaccattggacatgacgatattcccttctttgacgaggagccggagcacatggcgcca
cgccgttccgcgccggctgccggcagcattggcggcggtattgcggcccgcgccatggca
gcacgcgacagcggccgccgccccgattatctctcaggcctcaatgccgaacaggcggaa
gccgtcgaaacgctcgacggccccgtactggtgcttgctggcgccggcaccggcaagacg
cgcgtgctcacgacacgcatcgctcatatcctgtccaccaaccgcgccttccccagccag
attctcgccgtgaccttcaccaacaaggcagcacgcgagatgaaggagcgtatcgcgctg
ctggtcggcggcgcggtcgaaggcatgccctggctcggcaccttccactcgatcggtgtg
aagctgttgcgacgtcacgccgagctggtcggcctcacctccagcttcaccattctcgac
acggacgatgtcatccgcctgatcaagcagctgatccaggctgaagggctcgacgacaag
cgctggcccgccaagcaatttgccggcatgatcgatacatggaagaacaagggcctcagc
cccgccgatattccggagggtgacgcccgcgcctttgccaacggcaagggccgcgaactc
tatgccgcctatcagaaccgcttgaagacgctgaacgcctgcgacttcggcgatcttttg
ctgcatccgatcaatatgttccgacagaatcccgatattctcaaggattatcaccagcgc
tttcgctacatcctcgtcgacgagtatcaggataccaacacggcgcaatatatgtggcta
cgcctgctagcgcagcggcagaagggcgagccgcagaatgtctgctgcgtcggtgacgac
gaccagtcgatctatggctggcgcggcgcggaggtggacaatatcctgcgcttcgagaag
gattttccgggcgccaaggtcatcaagctcgagcgcaactatcgctccaccgagcatatt
cttggggcggccgcgcatctgatcgcccataatgagggccggctcggcaagactctgttc
accgatcgctccgaccccgacgacatcaaagtgcaggtgcatgcctcctgggattccgag
gaggaagcgcgcgccatcggcgaagagatcgagcagctacagcgcaacaagcacaatctc
aacgacatcgccatcctcgtgcgcgcctccttccagatgcgcgagttcgaagaccgtttc
gtcacgctcggcctgaactatcgcgtcgtcggcggccctcgcttctacgagcgcctcgaa
atccgcgatgccatggcctatttccgcctggtctgccagccggccgacgatctcgccttc
gagcgcatcatcaacacgccgaagcgaggtctcggggacaccacagtccgcgccctgcac
gattacgcccgcgtgcgcgatattccgatgctggcggccgcggccgatatcatcgagact
gacgagatgaagccgaaggcgcgcaaggcgctgttcgacgtcgtgcaatccttccgccgc
tggcagggcctgctcgaaaacacgccgcataccgagcttgccgagcagatcctcgaagag
tccggctatacggacatgtggaagaacgacaaatcggcggaagcgccggggcgcctggaa
aacctgaaagaactcatccgctccatggatagtttcgaatccatgcgcggcttcctcgaa
cacgtcgccctcgtcatggatgccgagcagaacgaaaatctcgacgccgtctccatcatg
acgctgcactccgccaagggtctggaattcgacaccgtgttcctgcctggctgggaggaa
ggcctgtttccgcatcagcgctcgctcgacgaaagcggtcgcgccgggctggaggaagag
cgccgcctcgcttatgtcggcatcacgcgcgccaagcgccgctgccacatctggttcgtc
tccaaccgccgcatccacggcctctggcaatccacaatcccctcccgcttcctcgatgaa
ctgccggaaacgcatgttcaggtcgccgaagtcgagcaatcctatggcggatatggccgc
ggcggctacggccagtcccgcttcgacaaggccgatcccttcgccaacacctattccacg
cccggctggaagcgcgcgcaggccaaccgcaacgatgcgacccgtgacaactggggcagc
cgttccggccacgccgtcgaacgcatcggctatggcgaaagcggcccgaaagtgcgcacc
atcgacggcgaactggtggccaaatccacctccaccgaaccctccaaattcgccatcggc
gaccgcgtcttccacatcaagttcggcaacggcaatgtgtcggagatcgagggcaacaag
ctaacgatcgaattcgaccgcgccgggcagaagcgcgtgctggatgggtttgtggagaga
gtgtga
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