Rhizobium sp. 11515TR: CKA34_16175
Help
Entry
CKA34_16175 CDS
T06097
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rhr
Rhizobium sp. 11515TR
Pathway
rhr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKA34_16175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhr03019
]
CKA34_16175
Enzymes [BR:
rhr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CKA34_16175
Messenger RNA biogenesis [BR:
rhr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CKA34_16175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_RecD
AAA_19
Flavi_DEAD
CMS1
Motif
Other DBs
NCBI-ProteinID:
ASW07283
LinkDB
All DBs
Position
3286769..3288451
Genome browser
AA seq
560 aa
AA seq
DB search
MVRPGLFSVAPPKGIELTDFHSLGLSKQIVDTLSQNNFATPTPIQAQAIPIVLQGRDLIG
LAQTGTGKTAAFGLPIIEMLLKEAKRPDNRTVRTLILAPTRELVNQIADNLKLFVRKSPL
RINLVVGGASINKQQLQLERGTDILVATPGRLLDLINRRALSLGHVTHLVLDEADQMLDL
GFIHDLRKIAKLVPAKRQTLLFSATMPKAIADLASDYLTNPVKVEVSPPGKAADKVEQYV
HFVAGQNHKTEILKETISANPDGRAIVFLRTKHGAEKLMKHLDHVGFAAASIHGNKSQGQ
RERALKGFRDGDVRVLVATDVAARGIDIPGVSHVYNFDLPEVPDAYVHRIGRTARAGRDG
IAIAFCAPDEIRLLRDIERLMGIEIAVASGEAPADRGRPVRGKGRGGQNNGGQGRGQNGQ
GRERGEGRPQRPARRPFFDKENGEARGEAGERQERRPRNDRPQRENNRNADFRGQRRNEP
TPRPEVDNDLASTSDFRPARKQHNGNGAAHEGGAHRGQRHAHGRPAGRHNEERGAQGEQR
NGGNGRMRRRGNGGQRRERA
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgacccggcctattttctgtggcgcccccgaaaggtattgaattgaccgatttt
cactcgcttggtctctccaagcagatcgttgatacactgtcgcagaacaacttcgctacg
ccgacgccgatccaggcacaggcgatcccgatcgttctccagggccgcgatctcatcggc
ctcgcccagaccggcaccggcaagacagccgctttcggcctcccgatcatcgagatgctg
ctgaaggaagccaagcgtcccgacaaccgcaccgtccgcacgctgatcctcgccccaacc
cgcgagctggtgaaccagatcgccgacaatctgaagctcttcgtgcgcaagtcgccgctg
cggatcaaccttgtggtcggcggcgcgtcgatcaacaaacagcagcttcaactcgagcgc
ggcaccgatatcctcgtcgcgacaccgggtcgcctcctcgacctcatcaatcgccgtgcc
ctctccctcggccatgtcacccatctcgttctcgacgaagccgaccagatgctcgatctc
ggcttcatccacgacttgcgcaagatcgccaagctcgttccggccaagcgccagaccctg
ctcttctcggcaaccatgccgaaggcgatcgccgatctcgcttccgactacctgaccaat
ccggtcaaggtcgaagtctctcctccgggcaaggcagccgacaaggtcgagcaatatgtc
cacttcgtcgccggccagaaccacaagaccgaaatccttaaggaaacgatctctgccaat
ccggatggccgtgccatcgtcttcctgcgcaccaagcacggcgccgagaagctgatgaag
cacctcgatcacgtcggcttcgccgccgcctccattcacggtaacaagagccagggtcag
cgcgagcgcgcgctcaagggcttccgcgacggtgatgtccgtgttctcgtcgcgaccgac
gttgccgcccgcggcatcgacatccccggcgtttcgcacgtctacaacttcgatctgccg
gaagtgccggatgcatatgttcaccgcatcggccgcacggcgcgcgccggccgcgatggc
atcgccatagccttctgtgcccccgatgaaatccgcctgctgcgtgacatcgagcgcctg
atggggatcgagatcgccgttgccagtggcgaagccccggccgatcgcggccgtcccgtt
cgcggcaagggtcgtggtggccagaacaatggcggccagggcagagggcagaatggccag
ggacgcgagcgcggcgaaggccgcccgcaacgtccggcccgccgtccgttcttcgataag
gaaaacggcgaggctcgtggtgaggcaggcgagcgccaggaacgtcgcccacgcaacgac
cgtccgcagcgcgaaaacaatcgcaacgccgatttccgtggtcagcgccgcaacgaaccg
acaccgcgtccggaggtcgacaacgacctcgcctcgacctcggatttccgccccgctcgc
aagcagcacaacggcaacggagccgcgcatgagggcggtgcccatcgcggccagcgccac
gcgcacggccgccccgcaggccgccacaacgaagagcgtggcgcacagggcgaacagcgc
aatggcggcaacggccgcatgcgccgccgcggcaatggcggccagcgccgcgagcgtgcc
tga
DBGET
integrated database retrieval system
