Rhizobium sp. 11515TR: CKA34_24750
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Entry
CKA34_24750 CDS
T06097
Name
(GenBank) spermidine/putrescine ABC transporter
KO
K02055
putative spermidine/putrescine transport system substrate-binding protein
Organism
rhr
Rhizobium sp. 11515TR
Pathway
rhr02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
rhr00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
CKA34_24750
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rhr02000
]
CKA34_24750
Transporters [BR:
rhr02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
CKA34_24750
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_8
TAT_signal
DUF5881
TM_PetC
Motif
Other DBs
NCBI-ProteinID:
ASW09161
LinkDB
All DBs
Position
p11515TR-A:1160818..1161990
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AA seq
390 aa
AA seq
DB search
MNKSNNLVSSALRSNMQRRDMLKLMGAGAAALTVGGLSATSAMADDAAVAFWGTATLDIG
DKWQEFTRQSGVSPEFTDNGNDVGPVVARLAAGNANDLFDVGGFQGGAERELAKQGLIAP
WDVSKISNFAGIWQWAKDIPTLTYEGKQYGIPTVVNADSIIYRPDKLGKVDSYGVIFDPK
LKGRVAMEDAWINSAIFTAIYLKEAENKPIKEPGNLTESELGLVMEFLIKHKKDGQFRTF
WNGWEQGVQLVANEEVDAMTGWEPIVYEGRKRGLQVEYAAPVEGYEGWGNNTVLLKGATE
RGKADVAHKFVDGLLAGLYGCELGKARGYLVPTDNNLAYAKAHPDEYKADDVAKLADHVK
AKFSGKVYWQNCRPDNFQLYEEWWQKLRNA
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagagcaataatctcgtctcctccgccttgaggagtaacatgcagcgccgtgac
atgctcaagctgatgggcgcgggtgcagccgcactcaccgttggcgggctttctgcaacg
agtgccatggccgatgatgctgcggttgcattctggggcaccgccacgctcgatatcggc
gacaaatggcaggagtttactcgccaaagtggcgtttcgcccgagtttaccgataacggc
aacgatgtcgggccggtggtcgcgcgccttgctgccggcaatgccaacgatctcttcgat
gtcggcggctttcagggcggcgccgagcgcgagcttgccaagcagggtctgattgccccc
tgggacgtctccaagatctcgaatttcgccggcatctggcaatgggccaaggatatcccg
accttgacctatgagggcaagcagtacggcattcccaccgtcgtcaacgccgactccatc
atctaccgccccgacaagctcggcaaggtcgacagctatggtgtcatcttcgatcctaag
ttgaagggtcgtgtcgcgatggaagatgcgtggatcaacagtgccatcttcaccgccatc
tatctgaaggaagccgagaacaagccgatcaaggagccgggcaacctgacggaatccgag
ctcggtctcgtcatggagttcctgatcaagcacaagaaggatggccagttccgcaccttc
tggaatggctgggaacagggcgtgcagctggtggcgaacgaggaggtcgacgccatgacc
ggctgggagccgatcgtctatgagggccgcaagcgcgggcttcaggtggagtatgcagct
cccgtcgaaggctacgaaggctggggcaacaatacggtattgctgaagggcgccacggag
cgcggcaaggccgacgtcgcccataagttcgtcgatggcctgcttgccggcctctacggt
tgcgagctcggcaaggcgcgtggctatctcgtgccgaccgacaacaacctcgcctacgcc
aaggcccatccggatgaatataaggccgatgacgtcgccaagctcgccgatcatgtgaag
gccaagttctccggaaaggtctactggcagaattgccgcccggacaatttccaactctac
gaggagtggtggcagaagctgcgcaacgcctga
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