Rhodococcus sp. RCBS9: P0M12_16485
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Entry
P0M12_16485 CDS
T11459
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
rhrc Rhodococcus sp. RCBS9
Pathway
rhrc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhrc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
P0M12_16485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhrc03400
]
P0M12_16485
Enzymes [BR:
rhrc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
P0M12_16485
DNA repair and recombination proteins [BR:
rhrc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
P0M12_16485
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PDDEXK_1
AAA_25
ResIII
Motif
Other DBs
NCBI-ProteinID:
WEX01277
LinkDB
All DBs
Position
3495593..3498910
Genome browser
AA seq
1105 aa
AA seq
DB search
MDFDLLGPLPTGTTVLEASAGTGKTYAIVGLATRCVAEGLADISQVLLVTFSRAATQELR
ERARERFAGVSAALVDPEAARRSDDDLVAYLATADDEEIGVRRRRLLRALAEFDAGTITT
THSFCQRMLDGLGIAGEREPDTTFVESVDDLISEVVSDLYLSRYSRTDSSPPFSTKDALA
IARSAVGDGQAILEPDGEEETAPGQRVLFAAAARVEVERRKRTKGIRDFNDLLTLLHGVL
TDPEYGPVACRRVREKFKVVLIDEFQDTDPLQWDILRLAFHGHTTLVLVGDPKQAIYAFR
GAEVLSYLDAVDQADAHQELTTNWRSDPGLLAALEHLYGGAALGNEGIVAHPVEASHKKS
RLFGPVPMRVRHLPRTGAGPLNRSGFPAVGRLRSRVADDVAADVVALLGGDARLAVDGDP
RPVEPGDVAVLVRTHKHVAMIRDALDAVGVPSVLTGGSSVFATPSATQWLWLLQAIEQPH
RSDRVRLTALSPIFGRTSEELDKDGDNVVAELAGQLRSYSGLFARVGFAAVFERISAETN
LEKRVLAAPSGERDFTDLRHVAQLLGRVATEEAFGLSALVRWLSDRIKDPTSGSATDRSR
RLDSDAAAVQIATVHATKGLEFPIVYVPFSWESVGGFNSPTQLLHDPEGRRILDVGGQEG
PGYNARKTVAEAEEAGEELRLLYVALTRAQCQLVLWWAPSYGTSRSPLHRLMLGRTPGIA
EPARVVKVLDDGTTAARLATWPAAASDVISVEPVGPHPPSPVHWSRAAADVTELAAARFD
RDLDTLWRRTSYSALTAGAHHAVTTTGSEVEDPEKDDEPEDSVDLGSITPSPLEAFPSPM
NGLPAGAAFGTLVHEVLEVVDTAVADLRAELGMRCAEAVSVRAAEVDSEALADALYLVMQ
TPLGFGTLATIAPKDRLPELDFELPLAGGDDPVSMSVTLRGVSELLRRHLSSDDILASYA
DYLDRVETSPMRGFLTGSIDAVLRIPGPSFVIVDYKTNRIGRGDLTAANYTRELMATEMM
RSHYPLQALLYSVALHRYLRWRLPDYDPHRHLGGAQYQFVRGMLGPDSPPECGVFEWKPP
AQLTVELSDLLAGLDASHTVGEKIR
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
gtggacttcgatcttctggggccactgccgaccggcaccacggtgttggaagcgagcgcc
ggaactggcaagacctacgcgatcgtcggactcgcgacccgttgtgttgccgaaggcctc
gctgacatttcgcaagttctgctggtgacattcagtagggccgccactcaggaacttcgt
gagcgtgccagggagaggttcgcgggagtgtccgccgctctggtcgacccggaggcggcg
aggcggtcggatgatgatctggtggcgtacctcgccacagctgacgacgaggagatcggc
gtgcggcgtcgtcgactcctgcgcgctctcgcggagttcgacgccggcaccatcacgacc
acccacagtttctgtcagaggatgctcgacggactcggcatcgccggggaacgcgaaccg
gacacaacttttgtggagtcggtcgacgacctgatcagtgaggtcgtctcggatttgtac
ctcagccgctacagccggacggactcgtctccaccgttctccacgaaggacgcgctggcc
atcgcccgaagcgcagtcggtgatggtcaggcaattctcgaacccgacggcgaggaggag
accgcacccggtcagcgcgtcctcttcgcggctgctgctcgtgtcgaggtcgaacgacgt
aagcggaccaaaggaattcgcgacttcaacgatctgctgacgctgttgcacggtgtattg
acggatccggaatacggtcccgtcgcgtgtcgtcgggtgcgcgaaaagttcaaggttgtg
ttgatcgacgagttccaggacaccgatccgttgcagtgggacattctgcggttggccttc
cacggtcacaccaccctggtcctggtcggtgatcccaaacaagccatctatgcgttccgc
ggggcagaagtcctgagttatctcgatgcggtcgatcaggcggatgcgcaccaggagttg
accaccaattggcgtagcgacccagggttgttggcggcactcgaacacctctacggtggt
gccgcactcggcaacgaaggcatcgtcgcgcatccggtggaggcttcgcacaagaagtct
cggttgttcggcccggtgccgatgcgtgtgcgccatctgccccgtaccggagccggaccg
ctcaatcgttcgggatttccggccgtaggcagacttcgcagtcgcgtcgcggacgacgtc
gcagcagacgtggtcgcgctcctgggcggcgatgcccgcttggcagtcgacggtgatcca
cgcccggtcgaaccgggagacgtcgcggtgttggtgcgcacccacaagcacgtggcgatg
atccgcgatgctctcgatgccgtcggtgtaccttccgtattgaccggagggtccagtgtt
ttcgcgacacccagtgcgacccagtggctgtggctgttgcaggcgatcgagcagccccat
cgctccgaccgtgtccggttgacggccctctcgccgattttcgggcgcacctccgaagaa
ctggacaaggacggcgacaacgtcgttgcagaacttgcaggtcaactgcgctcctattcc
gggctgttcgcacgcgtcgggtttgcggctgtgttcgaaagaatctctgccgaaacaaat
ctggagaagcgtgtactcgcggccccgtccggcgaacgagatttcaccgatttgcggcac
gtcgcacaactcctcggtcgcgtcgccaccgaggaagcgttcgggttgagcgcactggtt
cgctggctttccgaccgaatcaaggatccgacgtccgggagcgcgaccgacagaagccgt
cgcctcgacagtgacgctgccgcagtgcaaatcgctacggtgcatgccaccaaagggctc
gagttcccgatcgtctacgtcccgttcagttgggagagcgttggcggcttcaactcgccg
acgcagctgttgcacgacccggagggacgccgcatcctcgacgtcggcgggcaggaaggc
ccggggtacaacgccagaaagactgttgcggaggccgaagaagcgggcgaagaactgcgg
ttgctgtacgtggcgctgacccgggcgcagtgccaactcgtgctctggtgggcacccagc
tacgggacctcccgctcgccgctgcaccggttgatgctcggacgtacacccggcatcgcc
gaacctgctcgggtagtgaaggtgctcgacgacggtacaaccgcagcacggctcgcaacc
tggccggcagcagcttccgacgtgatctcggtggaacctgttggtccccatccgccctcg
cccgtccactggtccagagcggctgcggacgtgaccgaactggccgcggcgcgtttcgat
cgagacctggacactctgtggcgtcgtacgtcgtactcggcactcaccgccggagcgcac
cacgcggtcacgaccacgggcagcgaggtcgaggatcccgaaaaagacgacgagccagag
gattccgtagacctcgggagcattaccccctcgcccctggaggcgttcccttcacccatg
aacggacttcccgcgggcgccgcattcggcacgctggtgcatgaggtgctcgaggtggtg
gacacggctgtggcagatctgagagcggaactcgggatgcgttgcgccgaggcggtctcg
gtacgggcggccgaggtcgactccgaagcactcgcggatgcgctgtatctggtgatgcag
actcccttgggattcggaaccttggccacgatcgcgccgaaagatcgtcttcccgaactc
gatttcgaactcccactggccggtggcgacgatccggtgtcgatgagtgtcacactccgc
ggagtatcggaactgttgaggcgccacctttcctccgacgacattctggcgtcgtacgcc
gactatctggaccgtgtcgagacgtcaccgatgcgcggattcctgacgggcagtatcgac
gcagtcttgcggatcccgggcccgtcgttcgtgatcgtcgattacaagaccaaccggatc
ggtcgcggcgatctgacggctgccaactacacgcgtgaactcatggcgacggagatgatg
cgctcgcactatccgctgcaggcactgctgtattcggttgcactgcatcggtatctgcgg
tggcgcctgcccgactacgatccgcaccgtcatctcgggggcgcgcagtatcaattcgtg
cgtgggatgctcggcccggacagcccgccggaatgcggtgtcttcgaatggaaaccgcct
gctcagctgacggttgaactatcggatctgctggccggtcttgatgcgtcccacacagta
ggggagaagattcgatga
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