Rhodococcus sp. RCBS9: P0M12_16490
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Entry
P0M12_16490 CDS
T11459
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rhrc Rhodococcus sp. RCBS9
Pathway
rhrc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhrc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
P0M12_16490 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhrc03400
]
P0M12_16490 (recD)
Enzymes [BR:
rhrc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
P0M12_16490 (recD)
DNA repair and recombination proteins [BR:
rhrc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
P0M12_16490 (recD)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
UvrD-helicase
AAA_11
Viral_helicase1
NAT10_TcmA_helicase
SH3_13
AAA_22
TraI_hel_assoc_N
AAA_24
SLFN-g3_helicase
UvrD_C
AAA_16
AAA_28
Motif
Other DBs
NCBI-ProteinID:
WEX01278
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All DBs
Position
3498907..3500775
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AA seq
622 aa
AA seq
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MTEAQLAQRAKGIVRIFNEAGVLVAADVHVATRVCSLGGETSEEVMLAAALAVRAVRSGS
VCLDLRRMRDVSVDNATEEELTSLPWPEPSEIVAALRLSPLVIGGNAGPLRPLRLIDTDD
GELLYLDRYFLQEQTIRRVLDERASTWPPADLKAVRTRLDSLFVDENGPTIAPDRQRIAA
ALAATQWTTVIAGGPGTGKTHTVARILALLSEELGSNARIGLAAPTGKAAARLQESVREQ
TASLGLPEELAAMTLHRLLGWQRGSSSRFKYNATNRLPYDVVVVDETSMVSLTLMARLLE
AVRPDARLLLVGDPDQLTSVDAGAVLADLVARPVKVSGNPTLTQLVGDDLTATGSEEALS
ADEQDRLRGGIIQLSRGRRFDGTIASLARAVRAGDSGEVLRILRSGDPAVSFHSPEDVDA
LRADIVASSEVVTASAEVGDAIGALKGLESHRLLCAHRDGPYGVGRWAQQAMEWVGTASG
QFLDPTRWYPGQPLLVTANDYEAKIYNGDAGVIVQREDGVPIAAFQRGSDAFLIHPSQLS
SVQTVYAMTIHRSQGSQYDTVSVMLPAEASSLLTRELLYTAITRARNHVRVIGTEDSVRA
GVQRQVLRASGLRREIRPYDGP
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaggcgcaattggcgcagcgcgccaaagggatcgtgcgaatcttcaacgaagcc
ggggttctggttgccgccgatgttcatgtcgcgacgagagtgtgcagcctgggcggtgaa
acttccgaagaagtgatgctggccgcggcgttggcagttcgggccgtgcgatcaggttcg
gtgtgcctcgatctacgacggatgcgtgatgtgagcgtcgacaatgcgacggaggaggaa
cttacgtcgttgccgtggcccgaaccgtcggagatcgttgccgcccttcggctgagccct
ctggtgatcggcggaaacgccggacctctcagaccgctccggttgatcgacacggacgac
ggtgaactcctctacctcgatcgatattttctgcaggagcagacgattcggcgagtgctc
gacgagcgggcgtccacgtggccgcccgccgacctgaaagcggtccgaacgcggctggat
tcgctgttcgtcgacgagaacgggccgaccatcgcgccggatcgtcaacggatagcagct
gctctcgccgcgacacagtggaccaccgtcatcgccggtgggcccggaaccggcaaaacc
catacggtcgcacgtattctcgctctcctgtcggaggaattgggttcgaatgctcgcatc
ggtctggccgcaccgacgggtaaagccgcagcacggctgcaggagtccgtacgtgagcag
accgcgagccttggccttcccgaagaactcgcggccatgaccctgcaccgcctactcggt
tggcagcgggggagttcgagtcgtttcaaatacaatgcgaccaacagacttccctacgat
gtggtcgtcgtcgacgagacgtcgatggtctccctcacgttgatggcgcgcctgctcgaa
gccgttcgccccgatgcccggctactgctcgtcggcgatcccgatcagttgacctcagtc
gacgcgggcgctgttcttgctgatcttgtcgcccgcccggtaaaggtcagtggaaatccg
acgctgacacagttggtgggtgacgatctcacggccactggttccgaagaggcattgagt
gcggatgagcaggatcgtctgcggggcgggatcattcaactctcacgcgggcgccgcttc
gacggaaccatcgcgtcgttggccagggcagttcgagcgggagattccggtgaggttctg
cgtatcctgcgcagcggtgatccagccgtctccttccattcgcccgaggatgttgacgca
ttgcgcgccgacatcgttgcgagttcagaggtggtgacggcgtcggccgaggtgggtgat
gcgatcggcgcgctgaaaggcttggaatcgcaccgccttctgtgcgcccaccgtgacgga
ccgtacggtgtcgggaggtgggcgcagcaggcgatggagtgggtcggcacggcatcaggg
cagtttcttgacccgacgcggtggtatccgggccaacccctgttggtgacggccaacgac
tacgaggcgaagatctacaacggggatgccggggtgatcgtgcagcgtgaggatggcgtg
cctattgccgcattccagcggggcagtgatgcgtttctgattcacccgagccaactctcg
tcggtgcagacggtttacgcgatgacgattcaccggagccagggcagccagtacgacacc
gtatcggtgatgttgccggccgaggcgtcgtcactgctgactcgggagttgttgtacacg
gcgatcactcgcgccagaaaccatgtgagagtaatcggcaccgaggattccgtgagggcg
ggagtgcagcgacaggtactcagggcaagtgggctgcgtcgggagatccgtccgtacgac
gggccgtga
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