Rhodococcus sp. RCBS9: P0M12_29150
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Entry
P0M12_29150 CDS
T11459
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rhrc Rhodococcus sp. RCBS9
Pathway
rhrc03030
DNA replication
rhrc03430
Mismatch repair
rhrc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhrc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P0M12_29150 (dnaE)
03430 Mismatch repair
P0M12_29150 (dnaE)
03440 Homologous recombination
P0M12_29150 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhrc03032
]
P0M12_29150 (dnaE)
03400 DNA repair and recombination proteins [BR:
rhrc03400
]
P0M12_29150 (dnaE)
Enzymes [BR:
rhrc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
P0M12_29150 (dnaE)
DNA replication proteins [BR:
rhrc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
P0M12_29150 (dnaE)
DNA repair and recombination proteins [BR:
rhrc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
P0M12_29150 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
OB_MCM10
Motif
Other DBs
NCBI-ProteinID:
WEX03633
LinkDB
All DBs
Position
complement(6269863..6273399)
Genome browser
AA seq
1178 aa
AA seq
DB search
MADSFVHLHNHTEYSMLDGAAKVGAMFEEAARLEMTAVGMTDHGNMYGASQFYNEAKSAG
IKPIIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLS
SLASIEGQLGKWPRMDEELIAAHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI
WGPDNFFLELMDHGLSIERRVREGLLDIGKQLGIPPLATNDCHYVTKDAAENHEALLCIQ
TGKTLSDPTRFKFDGDGYYLKSAAEMRAIWDNEVPGACDNTVAIGERVQSYEDVWAFHDR
MPIFPVPEGHTQQTFLRAEVMRGLDRRFPSGPPQEYLARADYEIGVINEMGFPAYFLVVG
DLINHAKDVGIRVGPGRGSAAGSLVAYAMGITNIDPIPYGLLFERFLNPERVSMPDIDID
FDDRRRGEMVRYATDKWGNDKVAQVITFGTIKTKAAIKDSARVQFGKPGFAIADQITKAL
PPPIMAKDISVSGITDPKHERYKEAVEVRALIDSSPDVAKIYKTAVGLEGLIRNAGVHAC
AVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDTLENIK
ANRGIDLDLDTLPMDDAATYELLARGDTLGVFQLDGGGMRELLKLMQPTGFGDIVAALAL
YRPGPMGVDAHISYAKRKNALEDVKPIHPELEEPLAEILSETYGLIIYQEQIMQLAQKVA
GYTLGQADLLRRAMGKKKLSELEKAYAGFRQGMLDNNFSEAAIKALWDTVLPFAGYAFNK
SHSAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKSAIYLADCRKLGITVLPPDVNE
SRVDFATVGDDIRFGMGSVRNVGANVVASIIKARTEKSKFTDFSDYLGKIDAMACNKKVT
ESLIKAGAFDSLGHPRKGLMLVHADAIDSVMSTKKAEAIGQFDLFGGAEADESITSVFDV
KIPDEEWDSKHRLALEREMLGLYVSGHPLNGVEHILRQQSDTSIAAILEGGVQDGAQVTL
GGIIASVDRRVNKNGLTWCIVQLEDLVGGIEVLFFPQAYAVYGMDIAEDAIVLVKARVSI
RDDRMSLIGNDLAVPDISAIGVARPLSVSLPLRQCTKDKLSALKQVLTRHPGTSDVHVRL
IGGTEISLWKVDDVLRVEPSSALMGDLKALLGPSCLTV
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
gtggctgactcgttcgtacatcttcacaatcacaccgagtactcgatgctcgacggtgcg
gccaaggtcggcgccatgttcgaggaggccgctcgtctcgaaatgaccgctgtcggcatg
accgaccacggaaacatgtacggcgccagccagttctacaacgaggcaaagagcgccggc
atcaagccgatcatcggcatcgaggcgtacatcgcacccgagtctcgcttcaacaccaag
cgagttctctggggagatcgcagccagaagtccgacgacgtctccggtagcggtgcgtac
acccacatgacgatggtggccgagaacgcgaccggactccgcaatctcttcaagctgtcg
tcgctcgcgtccatcgagggccagctcggtaaatggccacggatggacgaggagctcatc
gccgcgcacgccgagggcatcatcgccaccacgggttgcccgtccggtgagatccagacc
cgccttcgtctcggtcacgatcgcgaggctctcgaagctgccgcgaagtggcaggagatc
tggggcccggacaacttcttcctcgaactgatggatcacggtctctcgatcgagcgccgt
gtgcgagagggtctgctcgacatcggcaagcaactcggtattccgccacttgccaccaac
gactgccattacgtcaccaaggacgccgccgagaatcacgaggcgctgctctgcattcag
accggcaagacgctctccgaccccactcgcttcaagttcgacggcgacggctactacctc
aagtccgctgccgagatgcgcgccatctgggacaacgaggtaccgggggcatgcgacaac
accgttgccatcggcgagcgtgtgcagtcgtacgaggacgtgtgggcgttccacgaccgc
atgccgatcttcccggtcccggagggacacacgcagcagaccttcctgcgcgccgaggtg
atgcgcggactcgatcgccgcttcccgagcggaccgccgcaggagtacctcgcccgcgcc
gactacgagatcggcgtcatcaacgaaatgggcttcccggcctacttcctcgtggtcggc
gacctgatcaaccacgccaaggacgtcgggatccgtgtcgggcccggccgtggatcggct
gccggttcgttggtggcctacgcgatgggtatcaccaacatcgaccccatcccgtacggg
ttgctgttcgagcgattcctcaaccccgagcgtgtgtccatgcccgatatcgatatcgac
ttcgatgatcgccgtcgcggcgagatggttcgctacgcgacggacaagtggggcaacgac
aaggtcgcccaggtcatcaccttcggcaccatcaagaccaaggctgccatcaaggactcg
gctcgcgtccagttcggcaagccgggcttcgccatcgccgatcagatcaccaaggcactc
ccgccgcccatcatggccaaggacatctcggtttccggtatcaccgatccgaagcacgag
cggtacaaggaggccgtcgaggttcgagcactcatcgactccagcccggacgtcgcgaag
atctacaagaccgcggtgggtctggaagggctgatccgtaacgccggtgtgcacgcctgc
gcggtcatcatgtcgtccgaaccgctcaccgacgcaatcccggtctggaagcgcgcccag
gacggcgccatcatcaccgggtgggactacccctcgtgtgaagccatcggcctgctcaag
atggacttcctcggtctgcgaaacctcacggtcatcggcgacacgctcgagaacatcaaa
gccaaccgcggcatcgacctcgacctcgacacgttgccgatggacgatgcggcaacatac
gaactgctcgcccgcggcgacactctcggtgtgttccagctcgacggcggcggtatgcgc
gagttgctgaaactgatgcagcccaccggattcggcgacatcgtcgccgccttggcgctg
tatcgaccgggaccgatgggtgtggacgcccacatctcgtacgccaagcgcaagaacgcc
ttggaagacgtcaagccgattcaccccgaattggaggagccgctcgcggagatcctctcg
gagacctacggcctgatcatctaccaggagcagatcatgcaactggcgcagaaggtggcc
gggtacactctgggtcaggccgacttgctgcgtcgcgccatgggtaagaagaagctgtcc
gagctggaaaaggcctacgccggcttccggcagggcatgttggacaacaacttcagcgaa
gccgccatcaaggcgctgtgggacacggtccttcccttcgccggctacgcgttcaacaag
tcgcactccgccggctacggactcgtgtcgtactggactgcgtacctcaaggcgaactac
ccggccgagtacatggcgggtctgctgacctccgtcggtgacgacaaggacaagtccgcg
atctacctcgccgactgccgcaagttgggcatcaccgttctcccgccggacgtcaacgag
tcacgcgtcgacttcgcgaccgtcggcgacgacatccgtttcggtatggggtcggtgcgc
aacgtcggcgccaacgtcgtcgcctcgatcatcaaggcgcgcaccgagaagtcgaagttc
acagatttctccgactatctcggcaagatcgacgcgatggcttgcaacaagaaggtcacc
gaatcgctcatcaaggccggtgctttcgactcgttgggtcatccgcgcaagggcctgatg
ttggtccatgccgacgccatcgactccgtgatgagcaccaagaaggcggaggcgatcgga
cagttcgacctcttcggcggtgccgaggcggacgagtcgatcacctcggtgttcgacgtc
aagattcctgacgaagagtgggattccaagcatcgcctggcgctcgaacgagagatgctg
gggctgtatgtctccggtcacccgctcaacggcgtcgagcacattcttcgccagcagtcc
gacacgtccatcgccgcgattttggaaggcggcgtccaggacggtgcccaggtaactctc
ggcggcatcatcgcctcggtggaccgccgggtcaacaagaacggtctgacctggtgcatc
gtgcagctcgaagatctcgtgggtggaatcgaggtgctgttcttcccgcaggcgtacgcc
gtgtacggaatggacatcgccgaggatgccatcgtgttggtcaaggctcgcgtttcgatc
cgagacgatcggatgtcactgatcggcaacgaccttgcggtacctgatatttcggcgatc
ggggttgcgcgtccgctgtcggtctcgctgccgcttcggcaatgcaccaaggacaagctc
agtgctctcaagcaggtgttgaccaggcatccggggacgtccgatgtccatgtccgactg
atcggcggaaccgaaatcagcttgtggaaggtcgacgacgtccttcgggtcgaaccgtcc
tcggcactgatgggcgacctgaaggcattgctcggaccgagttgcctgacggtctga
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