Rhodococcus sp. RCBS9: P0M12_29440
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Entry
P0M12_29440 CDS
T11459
Name
(GenBank) DEDD exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rhrc Rhodococcus sp. RCBS9
Pathway
rhrc03030
DNA replication
rhrc03430
Mismatch repair
rhrc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhrc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P0M12_29440
03430 Mismatch repair
P0M12_29440
03440 Homologous recombination
P0M12_29440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhrc03032
]
P0M12_29440
03400 DNA repair and recombination proteins [BR:
rhrc03400
]
P0M12_29440
Enzymes [BR:
rhrc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
P0M12_29440
DNA replication proteins [BR:
rhrc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
P0M12_29440
DNA repair and recombination proteins [BR:
rhrc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
P0M12_29440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
GIY-YIG
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
WEX03688
LinkDB
All DBs
Position
6335490..6337250
Genome browser
AA seq
586 aa
AA seq
DB search
MSPASAREFPSPPPFSDGEKFDVGRQLSFDELDTPLSETTFVVVDLETTGGSADQDSITE
IGAVKIRGGEVLGEMATLVDPGRSIPPYIVELTGITTAMLIGAPPIERVLPAFLEFAEGA
VLVAHNAPFDIGFLKAAASRSARPWPAFRVLCTVKLARRVLTRDEAPSVKLSALAHLFQV
TTQPTHRALDDARATVDVLHGLIDRVGNQGVHSYSELVDYLPNISSHQRAKRSFAANLPR
SPGVYLFRGPSDEALYIGTATDLRRRVRNYFTGSETRGRMKEMVALATRVDHVECAHALE
AGVRELRLLSAHAPPYNRRSKFPKRGWWITLTDEAFPRLSVVRTPTADSIGPFTSRADAV
DVADTVAEFSRLRTCTKRLGRGAVHGPDCPARELGACPASWTPEINAEDYAAAPEAVRGF
FRGTNDTPLQQMQARIDELSAHALFENAARLRDRTVAVATAVRRTQRLAAVAAIEQLVLA
RPTGDGGWELSLIRSGRLASAGLARRGTHPMPVVDAITAAAETVLPDDAPFRGASPEELG
LIARWLSSDGVRIVSATSGYVEPVSGAGKWEAWCRLARAGTESEHR
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
gtgagtcccgcctcggcccgagaatttccgtctccgcccccgttctccgacggggagaag
ttcgacgtcgggcggcaactgagcttcgacgaactggacacaccgctgagcgagacaaca
tttgtcgtcgtcgacctcgagaccacagggggcagcgccgaccaggactccatcaccgag
atcggcgccgtcaagatccgcggcggcgaggtactgggcgaaatggcaacactcgtcgac
cccggccggtcgattccgccgtacatagtcgaactgaccggaatcaccacagccatgctg
atcggtgcacctcccatcgaacgtgtcctgcctgcttttctcgagttcgccgagggcgcg
gtgctggtggcacacaacgcgccgttcgacatcggtttcctcaaagcagcggcgtcacgc
agcgcgcgcccgtggcctgcgttccgtgtcctgtgcaccgtcaaactcgcccggcgcgta
ctcacacgcgacgaagcaccttcggtgaagctctccgcactcgcccatctcttccaagtg
accacccagccgacgcaccgggctctcgacgacgcgcgtgcgaccgtcgacgtcctccac
ggactgatcgacagggtcggaaaccagggtgtccacagttacagcgaactagtcgactac
ctgcccaacatttcctcgcatcaacgggccaaacggtccttcgccgcaaacctgccgcga
agccccggtgtctaccttttccgcggtccttccgacgaagccctctacataggaactgct
accgaccttcgacgccgcgtccgcaactacttcaccggttcggagacccgcggccggatg
aaggaaatggtcgcgctggccacccgcgtggaccatgtcgagtgcgcgcacgctctcgaa
gccggggtgcgtgaactacgactgctgagcgcgcatgcgccgccgtacaaccgtcgctcc
aagtttcccaagcgaggttggtggatcaccctcaccgacgaggcgtttccgagactgtcc
gtggttcgcacgcccacggccgattcgatcggcccgttcacctctcgcgccgacgcagtc
gacgtcgccgacaccgtcgcagagttcagtcgtctgcgcacgtgtaccaagcgtctcgga
cgcggcgccgttcacggccctgactgccccgctcgcgaactgggggcgtgtccagcctcc
tggaccccggaaatcaacgcagaggactacgcggccgcccctgaggccgtgcgtgggttc
ttccgaggaaccaacgacactcccctccaacagatgcaggcccggatcgacgagctgtcc
gcacacgcgttgttcgagaatgctgcgcgtctgcgtgaccgaacggtcgcagtcgccacc
gcagtgcggcgcactcagcgactcgctgcagtcgcggcgatcgaacaactcgttctcgcc
cgccccaccggagacggcggctgggagctgtcgttgatccggtccgggcgtctcgcgtcc
gccgggctcgccagacgtgggactcacccgatgcccgtcgtcgacgccatcaccgcggcg
gccgaaaccgtcctaccggacgacgccccgttccgcggcgcgtcacccgaagaactggga
ctgatcgcaaggtggctctcgtcggacggtgtccgaatcgtgtcggcgacatccggatac
gtcgaacctgtgagcggcgccggcaagtgggaagcctggtgccgactcgcccgagccgga
accgaatccgaacatcgatga
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