Rhodococcus sp. RDE2: RDE2_00970
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Entry
RDE2_00970 CDS
T11469
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
rhrd Rhodococcus sp. RDE2
Brite
KEGG Orthology (KO) [BR:
rhrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhrd03400
]
RDE2_00970 (phrB)
Enzymes [BR:
rhrd01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
RDE2_00970 (phrB)
DNA repair and recombination proteins [BR:
rhrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
RDE2_00970 (phrB)
Prokaryotic type
RDE2_00970 (phrB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
BDB58303
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All DBs
Position
complement(108358..109713)
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AA seq
451 aa
AA seq
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MARPSIIWFRRDLRLNDLPTLLSATEAADDVLALFVLDDALLRPSGARRRDFLMGCLRAL
DRDLGGRLLVVEGDPVTLVPQVAAEFDATAVHISSDHGPYGTRRDRAVAEALGDVPLVTT
GSPYAVTPGRVTKPDGSAYKVFSAFRRAWNDHGWHSPAATGPDTADWVDPSGCSARVPIP
EVGDEPAPPAGEAAALERWRGFLDDGLERYATDRDRPAFDGTSGLSPYLKFGCIHPRTLL
HDMRNRADNGAVTFRSELAWRDFYADVLFQRPETARTNYNSDFDAITYDSGPDADALFAA
WCEGRTGFPIVDAGMRQLLAEGVMHNRVRMIVASFLTKDLHLPWWRGARHFMKHLVDGDL
ASNQHNWQWTAGSGTDAAPYFRVFNPTRQGEKFDPTGEYVRRWVPELRSIDGARVHSLPD
GPPDGYPEPVVDHAHERRVALDRYERIRSAR
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggcccgccccagcatcatctggttccgtcgtgatctccgactgaacgatctgcccacc
ctgctctcggccaccgaggccgccgacgacgtcctcgccctgttcgtcctcgacgacgca
ctgctccgcccgtccggggcccgccggcgcgacttcctcatgggatgcctgcgagccctc
gaccgggatctcggcgggcgcctgctcgtcgtcgagggagacccggtgacactggtgccg
caggtcgccgccgagttcgatgcgaccgcggtccacatcagctccgaccacggcccctac
ggcacgcgacgcgaccgggcggtcgccgaggcgctcggcgacgtcccgttggtgaccacc
ggctctccttacgccgtcacgccgggccgcgtgacgaaacccgacggctctgcatacaag
gtgttctcggccttccgccgtgcctggaacgaccacggatggcactcccccgcggcgacc
ggcccggacaccgccgactgggtggacccgagcggctgttccgcacgcgtgccgattccc
gaggtcggtgacgaacccgcaccgcccgccggtgaggcggccgcactggaacggtggcgc
ggattcctcgacgacggtctcgagcggtacgccaccgatcgcgaccggccggccttcgac
ggcacgagcggcctgtcgccctatctgaagttcggctgcatccatccgcggaccctgctg
cacgacatgaggaaccgggcggacaacggggccgtcaccttccgcagcgaactggcgtgg
cgcgacttctacgccgacgtcctgttccagcggcccgagaccgcccggaccaactacaac
agcgacttcgatgccatcacctacgattccgggcccgacgccgacgccctgttcgccgcg
tggtgcgagggccggacgggattcccgatcgtcgacgccgggatgcggcagctcctcgcc
gagggtgtcatgcacaaccgggtgcggatgatcgtcgcgtcgttcctgacgaaggacctg
cacctgccgtggtggcgcggggcacggcatttcatgaagcatctggtggacggcgacctg
gcgtccaatcaacacaattggcagtggacggcgggcagcggcaccgacgccgctccctac
ttccgggtgttcaatccgacccggcagggcgagaagttcgatccgacgggtgaatacgtg
cgcaggtgggtacccgaactgcggagcatcgacggcgctcgtgtgcacagcctgcccgac
ggccctccggacggatatccggaaccggtcgtcgatcacgcacacgaacgtcgcgttgcc
ctggacagatacgagcggattcgctcggcccgatga
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