Rhodococcus sp. RDE2: RDE2_03000
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Entry
RDE2_03000 CDS
T11469
Name
(GenBank) hypothetical protein
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
rhrd Rhodococcus sp. RDE2
Pathway
rhrd03030
DNA replication
rhrd03430
Mismatch repair
rhrd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RDE2_03000
03430 Mismatch repair
RDE2_03000
03440 Homologous recombination
RDE2_03000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhrd03032
]
RDE2_03000
03400 DNA repair and recombination proteins [BR:
rhrd03400
]
RDE2_03000
Enzymes [BR:
rhrd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RDE2_03000
DNA replication proteins [BR:
rhrd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RDE2_03000
DNA repair and recombination proteins [BR:
rhrd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RDE2_03000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
AAA
DNAX_ATPase_lid
AAA_22
RuvB_N
AAA_30
AAA_19
DnaX_C
Rad17
AAA_16
AAA_14
Mg_chelatase
DEAD
AAA_18
RNA_helicase
Motif
Other DBs
NCBI-ProteinID:
BDB58506
LinkDB
All DBs
Position
331730..333973
Genome browser
AA seq
747 aa
AA seq
DB search
MALYRKYRPATFAEVVGQEHVTVPLSTALDTGRINHAYLFSGPRGCGKTSSARILARSLN
CETGPTSTPCGTCRSCVSLGPGGGGNLDVTELDAASHGGVDDTRELRDRAFYAPAESRYR
IFIIDEAHMVTTQGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRSRTHHYPFRLLAPT
AMRGLLEQICGQENVPVEDAVYPLVIRAGGGSPRDSLSVMDQLLAGAGPEGVTYERALSL
LGVTDVALIDEAVDSLAAGDGAALFGTVEKVMDAGHDPRRFAVDLLERLRDLILMKSVPD
AAERGLVDAPGDVLERMRDEATRLGPATLTRYAEIVHAGLGEMRGATSPRLLLEVMCARM
LLPAASDGETAVLQRLERLEQGIVAAPVGGAAPKPVAAPAAPAAPPISPDEPAARFQRPS
QRRAAEVAPAAPSTETAQPREAAQPQPEVPAQQPPAQHEPVQPEPAQPVPTPTPSPAAAQ
PPVVPEAPQPQSVPDEVAAQEVPPPAPEEPVAPEPEPEPARATGGPDAAQMRGVWSEVRA
KVRERSRTVEVMLSGATVRSVDGTRVVLVHDSAPLAKRLADARNATVIADALKAVFGGEF
EVTCVHGSAAAEAPARTPAPEKNSRPAGQPRFSRPSQAKNAAAPAPVEAPAPPQRPAAAP
SAAPTFTRPSAENVDDIPPPEAPDLPDDPGSGYDAPPPDPSQMTEADVEEMFAEAATPGD
PSTRRDPEEVAIELLKDVLGAKPLDEK
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
gtggctctgtaccggaagtatcgacctgcgaccttcgcggaggtggtggggcaggagcac
gtcaccgtgcccctcagcacggcgctcgacacgggccgcatcaaccacgcctacctgttc
tcgggtcctcggggatgcggcaagacgtcctcggcccgaattctcgcccgctcgctcaac
tgcgagaccggccccacgtccacgccgtgtggcacgtgccggtcgtgcgtgtcgctcggc
ccgggcggtggaggcaacctcgacgtcaccgaactcgacgccgcgagccacggcggtgtc
gacgacacccgcgaactccgcgaccgcgcgttctacgctccggccgagtcgcgctaccgc
atcttcatcatcgacgaggcgcacatggtcaccacgcagggcttcaacgccctgctcaag
atcgtggaggagccgccggagcacctcatcttcgtcttcgcgaccaccgagcccgagaag
gtgctgcccaccatccggtcgcgcacgcaccactatcccttccggctcctcgctcccacg
gcgatgcggggtctgctcgaacagatctgcggccaggagaacgtgccggtcgaggacgcg
gtctatccgctggtcatccgtgccggcggtggatccccccgcgactcgctgtcggtgatg
gaccagctcctcgccggtgccggccccgagggtgtcacctacgagcgcgccctgtcgctg
ctcggcgtcaccgacgtcgcgctcatcgacgaggccgtcgattcgctcgcggccggcgac
ggcgcggcgctgttcggcaccgtcgagaaggtcatggacgccgggcacgacccgcgtcgc
ttcgccgtcgacctcctcgaacgcctccgcgatctcatcctcatgaagtccgtccccgac
gccgccgagcgcggactcgtcgacgcacccggcgacgtcctcgagcggatgcgcgacgag
gcgacccgcttgggcccggccaccctcacccgctacgccgagatcgtgcacgccgggctc
ggcgagatgcgcggtgcgacgtcgccgcgtctgctgctcgaggtgatgtgcgcgcgcatg
ctgctccccgcggcgtccgacggggaaactgctgtcctgcaacgtctcgaacgactcgaa
cagggcatcgtcgcggctcctgtcggaggtgccgcgccgaagccggtggcagcacccgcc
gcgcctgccgcaccgcccatctcgcccgacgaacccgcggcacgtttccagcgtccctcc
cagcgccgggcagccgaggtggcacctgccgcaccgtccaccgagactgctcagccccgc
gaggccgcgcagccgcaaccggaagttcctgcccagcaaccccctgcccagcacgaaccg
gtgcagcccgaaccggcccagccggtaccgaccccgacgccgtctcccgccgccgcgcaa
cctcccgtcgtcccggaggcgccgcagccgcagagtgtgcccgacgaggttgccgcgcag
gaggttccgccgcccgcccccgaggagccggttgctcccgaacccgaacccgaacccgcc
cgcgcgacaggcggtcccgacgcggcccagatgcggggtgtgtggtcggaggtgcgtgcg
aaggtccgcgaacgcagccgcaccgtcgaagtgatgctctcgggcgccaccgtgcggtcg
gtcgacggcacccgcgtcgtgctcgtgcacgactccgctccgctcgcgaagcgactcgcc
gacgcgcgcaacgccacggtcatcgccgatgcgctgaaggcggtcttcggcggggagttc
gaggtcacctgcgtccacggttccgctgctgcggaggcgcctgccagaaccccggcgccc
gagaagaattcgcgtccggcgggtcaaccgcgtttctcccggccgagtcaggcgaagaac
gccgcggcgcccgctcccgtcgaagcccccgccccaccgcagcgaccggcggcggcaccg
tcggctgctccgacgttcacacgtccgtccgcggagaacgtcgacgacattccgccgccc
gaagcgcccgaccttcccgacgatccgggctcgggctacgacgcgccgccgcccgacccg
tcgcagatgacggaggcggacgtcgaggagatgttcgccgaggccgccacgcccggcgac
ccgtcgacgcgccgcgatccggaggaagtcgcgatcgagctgctcaaggacgtgctggga
gcgaaaccgctcgacgagaagtag
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