Rhodococcus sp. RDE2: RDE2_12140
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Entry
RDE2_12140 CDS
T11469
Symbol
sbcD
Name
(GenBank) nuclease SbcCD subunit D
KO
K03547
DNA repair protein SbcD/Mre11
Organism
rhrd Rhodococcus sp. RDE2
Brite
KEGG Orthology (KO) [BR:
rhrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhrd03400
]
RDE2_12140 (sbcD)
DNA repair and recombination proteins [BR:
rhrd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RDE2_12140 (sbcD)
Archaeal homologous recombinant proteins
RDE2_12140 (sbcD)
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Ortholog
Paralog
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Motif
Pfam:
Metallophos
Metallophos_2
SbcD_C
DNA_pol3_theta
Motif
Other DBs
NCBI-ProteinID:
BDB59420
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All DBs
Position
1292885..1294093
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AA seq
402 aa
AA seq
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MSVLSSTVCPMRILHTSDWHIGRTFHGVDLLADQARALRAIADLVAERRIDVVVVPGDVY
DRSIPSSDAVAVCNAGLEAIREAGAIIVATSGNHDSPVRLGAGAAFAAHGGLHLITRVSQ
IDSPVVLHDEHGPVRFYGIPYLEPEITRAELGVPEARSHQQILDAAMERVRADVADRHGR
TVVLAHAFVVGGEPSDSERSISVGGVETVAASSFDGVDYVALGHLHSPQTVSETVRYSGS
PLPYSFGERSHRKAVFVVDLDASGAASVERVDLPVIRELTRLEGELDDLLADPAHAAVEE
HYVSAVLTDAIRPLDAMRRLQERFPYAVHVEWQRPTGSTESSYRDKVRGRSDRDIAASFL
TDVRSEPSERERGWIDEALREVDRRRGIGDETDTQWRTDVPA
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtcctctcctctaccgtctgtcccatgcggatcctgcacacctccgactggcac
atcggccgcaccttccacggtgtcgacctgctcgccgaccaggcgcgtgcgctgcgggcc
atcgccgatctggtggccgaacgccggatcgacgtggtggtcgtgccgggcgacgtgtac
gaccggtcgatcccgagttccgacgcggtcgccgtgtgcaacgccggcctcgaggccatc
cgtgaggcaggggcgatcatcgtcgccacctccggcaaccacgactcgccggtccggctc
ggtgccggcgctgccttcgccgcgcacgggggtctgcacctgatcacccgcgtatctcag
atcgacagccctgttgtcctgcacgacgagcacggcccggtccgcttctacggcatcccg
tatctcgaacccgagatcacccgcgccgagctcggcgtgcccgaggcccgttcgcaccag
cagatcctcgacgcggcgatggaacgcgtgcgcgccgatgtcgcggatcggcacggccgc
acggtcgtcctggcgcacgccttcgtcgtcggtggcgagcccagcgactccgagcggtcc
atctccgtcggcggggtcgagacggtcgccgcgtcgtcgttcgacggtgtcgactacgtc
gcgctcggtcacctgcattccccgcagacggtgagcgagacggtccggtactcgggatcg
ccgttgccgtactccttcggcgagcgctcgcaccgcaaggcggtcttcgtcgtcgacctc
gacgcctcgggtgcggcgtccgtcgagcgggtcgatctcccggtgatccgcgaattgact
cgtctcgaaggcgaactggacgatctgctcgccgatccggcgcatgccgccgtcgaggag
cactacgtctccgcggtgctgaccgacgcgatccgcccgctcgacgccatgcgtcgcctg
caggagcggttcccgtacgccgtgcacgtcgaatggcagcgaccgaccgggtccacggag
agcagctaccgcgacaaggtgcgcgggcgcagtgatcgcgacatcgccgcgtcgttcctc
accgatgtgcgttccgagccgtccgaacgcgagcgcggctggatcgacgaagcgttgagg
gaggtcgaccgtcgtcgtggcatcggcgacgagaccgacacgcagtggcggacggacgtg
ccggcatga
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