Rhodococcus sp. RDE2: RDE2_12620
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Entry
RDE2_12620 CDS
T11469
Symbol
recD
Name
(GenBank) RecBCD enzyme subunit RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rhrd Rhodococcus sp. RDE2
Pathway
rhrd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RDE2_12620 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhrd03400
]
RDE2_12620 (recD)
Enzymes [BR:
rhrd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
RDE2_12620 (recD)
DNA repair and recombination proteins [BR:
rhrd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RDE2_12620 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
AAA_11
Viral_helicase1
UvrD-helicase
NAT10_TcmA_helicase
SH3_13
AAA_22
TraI_hel_assoc_N
AAA_16
AAA_24
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
BDB59468
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All DBs
Position
1351105..1352994
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AA seq
629 aa
AA seq
DB search
MIESMTDVRIAQRGKGALRQFNEVGALSAADVHVALRLAALGGEDDPHVHLATALAVRAV
RSGSVCLDLTRFREVTVEEDADGHPVVDPASLPWPRDEDVLAALRRSPLVVGGERGPLRP
LRLVDTAEGPLLYLDRYFRQEQTIRRVLAERAATFTDLDEERIAATLDELFHHPDDPSRP
APAPDRQRVAAALAATRPTTVIAGGPGTGKTHTVARILALLTRLYGHELRIGLAAPTGKA
AARLQESVREQETELGLPPNLTAMTVHRMLGWQRGRTRFRYHAGNHLPYDVIVVDETSMV
SLTMMCRLLEAVRPDTRLVLVGDPDQLASVDAGAVLADLVGSPVGGTLDPVFERVVARDL
AAADDPAEAAFTPAQRARLGGGVVRLSRGRRFGGAIAKLAVAVREGEADEVLKILRSGDP
KVSFLSPHDLDALRDDIVRSAAEVTKAAETGDVDTALKRFEEHRLLCAHRDGPAGVQWWA
RQAAEWIGEAAGQRLDPESWYPGRPLLVTANDHDMQIYNGDTGVVVRRGDELVAAFARGE
TPFELRPSQLPAVSTVYAMTIHRSQGSQYGTVSVVLPDSGSALLTRELLYTAITRARSHV
RIIGTEDAVRAGVARQVLRASGLRREIRV
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgagtccatgaccgacgttcggatcgcccagcgcggcaagggtgctctgcggcag
ttcaacgaggtgggcgcactctccgccgccgacgtgcacgtcgcgctgcgactcgcggca
ctcggcggggaggacgacccgcacgtgcatctcgccaccgcgctggctgtgcgtgccgtg
cgatccgggtcggtgtgcctcgacctcacgcgtttccgcgaggtcacggtcgaggaggac
gcggacggtcatcccgtcgtcgaccccgcgagcctgccgtggccccgcgacgaggacgtg
ctcgcggcgctgcgtcgcagccccctcgtggtcggcggcgaacgtgggcccctgcgaccg
ttgcgtctcgtcgataccgcggaaggcccgctgctgtatctcgaccggtacttccggcag
gagcagacgatccgccgggtgctcgccgaacgcgcggcgaccttcaccgacctcgacgag
gagcgcatcgcggcgacgctcgacgagttgttccaccatcccgacgatccgtcccggccc
gcgccggcacccgaccgtcagcgtgtcgcggcggcgctcgccgccacccgaccgaccacg
gtgatcgcgggcgggccgggcaccggcaagacccacaccgtggcgcggatcctcgcgctg
ctcacccgtctgtacgggcacgagctgcgcatcggcctggccgctcccaccggtaaggcc
gccgcgcgcctgcaggagtcggtgcgtgagcaggagaccgagctgggtctgccgccgaat
ctcaccgccatgaccgtgcaccggatgctcggctggcagcgcggccgcacccgcttccgc
taccacgcgggcaaccatctgccgtacgacgtgatcgtcgtcgacgagacgtcgatggtg
tcgctgacgatgatgtgccgcctgctcgaggcagtgcggcccgacacccggctcgtcctc
gtgggcgaccccgatcagctcgcctccgtcgacgccggtgccgtgctggccgatctggtg
gggagcccggtcggcggcaccctcgatccggtcttcgaacgggtcgtcgcccgcgatctg
gcggccgccgacgacccggccgaggcggccttcactccggcccaacgcgcccggctcggt
ggtggtgtcgtgcgcctgagccgtggccgccgcttcggtggcgcaatcgcgaagctggcc
gttgccgtacgcgagggtgaagccgatgaggtactgaagatcctgcgcagcggcgacccg
aaggtgtcgttcctatctccccacgacctcgacgccctgcgcgacgacatcgtccgctcc
gccgccgaggtcaccaaggccgccgagacgggggacgtcgacacggcgctgaagcgcttc
gaggaacaccggttgctgtgcgcgcaccgcgacggcccggccggcgtgcagtggtgggcg
cggcaggccgccgaatggatcggggaggccgccgggcagcgcctcgaccccgagagctgg
taccccggccggccgctgctcgtcaccgcgaacgaccacgacatgcagatctacaacggt
gacaccggcgtggtggtgcggcgcggcgacgaactcgtcgcggcgttcgcccgcggcgag
acaccgttcgaactgcgcccgagtcagctcccggcggtgagcaccgtctacgcgatgacg
atccaccgcagccagggcagccagtacggcaccgtctcggtggtgctgcccgattccgga
tcggcgctgctcacccgcgaactgctgtacaccgcgatcacacgtgcgcggtcgcacgtg
cggatcatcgggaccgaggacgcggtacgcgcgggcgtggcacggcaggtgctccgagcg
agcgggctgcgacgggagattcgcgtgtag
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