Rhodococcus sp. RDE2: RDE2_20090
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Entry
RDE2_20090 CDS
T11469
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rhrd Rhodococcus sp. RDE2
Pathway
rhrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RDE2_20090 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhrd03019
]
RDE2_20090 (rnj)
Messenger RNA biogenesis [BR:
rhrd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RDE2_20090 (rnj)
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Other DBs
NCBI-ProteinID:
BDB60215
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Position
2171649..2173454
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AA seq
601 aa
AA seq
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MSRPARGRGRATRNAGPPARVPRRVAQNSANPQRPDARIVDPTERLGLPPKAPRDGLRVV
ALGGIGEIGRNMTVFEHQGRLLVVDCGVLFPEDQQPGVDLILPDFRYIEDRMDDVEAIVL
THGHEDHIGAVPFLLRLRPDIPVVGSKFTLALVAAKCREHRQRPNLVEVVEGQTTSHGPF
ECEYFAVNHSIPDAIAVAIRTAAGVVLHTGDIKLDQLPLDNRLTDLAGFSRLGDEGVDLF
LVDSTNAEVPGFVTPEREIGGVLDTVIGKATNRVIVASFASHVHRIQQIVDVAERYNRRV
AFVGRSMVRNMQIAQDLGYLNVPDGLEVDIDTAASLPDDRVVLVSTGSQGEPLSALSRMA
RGEHRQINIRADDLVVLASSLIPGNENSVFAVVNGLAKRGAKVVTQQNAKVHVSGHASAG
ELLYLYNAVRPTNAMPVHGEWRHLRANAALAEATGVPRERIVLAEDGVVVDMVDGLAEIV
GRVPVGHVYVDGLSVGDVGESTLSDRLVLGEGGFISISVAVDATTGRAVSTPEVSGRGFS
DDPGALNEAAQLVDKALNELAAEGVTETHRIAQGIRRVVGRWVAETYRRRPMIVPTVIPV
S
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgagccgccccgcacgcggccggggccgcgccacccgcaacgccggtccgcccgcccgc
gttccgcggcgtgtcgcgcagaactcggcgaacccccagcgtccggacgcccgcatcgtc
gaccccaccgagcgattggggctgccgccgaaggctccccgcgacggtctgcgggtcgtc
gcgctcggcggtatcggtgagatcggccgcaacatgacggtcttcgagcaccagggacga
ctgctcgtcgtcgactgcggtgtgctcttccccgaggaccagcagccgggcgtcgacctg
atcctgcccgacttccggtacatcgaggaccggatggacgacgtcgaggcgatcgtcctc
acccacggtcacgaggaccacatcggtgccgtgccgttcctgctgcgcctgcgccccgac
atcccggtcgtcgggtccaagttcaccctggcgctggtcgcggcgaagtgccgcgagcac
cgtcagcgccccaacctcgtcgaggtcgtcgaggggcagaccacctcacacggcccgttc
gagtgcgagtacttcgcggtcaaccactccatccccgacgcgatcgccgtcgcgatccgt
accgcggcgggcgtcgtgctgcacaccggcgacatcaagctcgaccagctgccgctcgac
aaccgtctcaccgacctcgcgggcttctcccgcctcggtgacgaaggtgtcgacctgttc
ctcgtcgactcgacgaatgccgaggtccccggtttcgtcacgcccgagcgcgagatcggc
ggagtgctcgacaccgtcatcggcaaggcgaccaaccgggtgatcgtcgcgtccttcgcg
agccacgtgcaccgcatccagcagatcgtcgacgtcgccgagcgctacaaccggcgcgtg
gcgttcgtcggccggtcgatggtccgcaacatgcagatcgcgcaggatctcggctacctg
aacgtgcccgacggcctcgaggtcgacatcgacaccgccgcgagcctgcccgacgaccgg
gtcgtgctggtctccaccggttcgcagggcgaaccgctctcggcgctgtcccggatggcg
cgcggcgagcaccggcagatcaacatccgggccgacgacctcgtcgtcctcgcgtcgtcg
ttgatccccggcaacgagaactcggtgttcgcggtcgtcaacggtctggccaagcgcggc
gcgaaggtcgtcacccagcagaacgcgaaggtgcacgtctccggtcacgcgtcggccggc
gaactgttgtacctctacaacgcggtgcgtcccaccaacgcgatgcccgtccacggcgag
tggcgccacctgcgggcgaacgccgccctggccgaggccacgggtgttccccgcgagcgg
atcgtgctcgcggaggacggtgtggtcgtcgacatggtcgacggactcgcggagatcgtc
gggcgcgtcccggtcggtcacgtctacgtcgacggcctgtcggtgggcgacgtgggcgag
tccacgctgtccgatcgtctcgtcctcggcgagggtggtttcatctcgatctccgtcgcg
gtcgacgccacgaccggccgtgcggtgagcaccccggaggtttccggtcgcggtttctcc
gacgatccgggcgcgctcaacgaagcagcgcagctcgtcgacaaggcgctcaacgaactc
gctgccgaaggggtcacggagacccatcgcatcgcccagggcatccgccgggtcgtcgga
cgctgggtcgccgagacctatcgtcgtcgcccgatgatcgtgcccacggtgatcccggtc
tcctga
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