Rhodococcus sp. RDE2: RDE2_26180
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Entry
RDE2_26180 CDS
T11469
Symbol
pafA
Name
(GenBank) Pup--protein ligase
KO
K13571
proteasome accessory factor A [EC:
6.3.1.19
]
Organism
rhrd Rhodococcus sp. RDE2
Brite
KEGG Orthology (KO) [BR:
rhrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
rhrd03051
]
RDE2_26180 (pafA)
Enzymes [BR:
rhrd01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.1 Acid-D-ammonia (or amine) ligases (amide synthases)
6.3.1.19 prokaryotic ubiquitin-like protein ligase
RDE2_26180 (pafA)
Proteasome [BR:
rhrd03051
]
Prokaryotic proteasome
Bacterial regulatory particles
RDE2_26180 (pafA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pup_ligase
Motif
Other DBs
NCBI-ProteinID:
BDB60824
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All DBs
Position
2804116..2805459
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AA seq
447 aa
AA seq
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MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA
TAECDDLLQLVEHDHAGERVLEELLIDAEQRLAEEGIGGDIFLFKNNTDSAGNSYGCHEN
YLVARVGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVSSATTR
SRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGSAALVLEMIEAGVPFRDFAL
DNPIRAIREVSHDLTGRRPVRLAGGRQASALDIQREYHARAVEYLHQREPDPHVAQVVDL
WGRVLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYNMELSDPKIAQLDLAYHDIKRGRG
VFDLLQRKGLAARATDDESVDAAVNTPPQTTRAKLRGDFIAAAQAAGRDFTVDWVHLKLN
DQAQRTVLCKDPFRSVDERVERLIASM
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgggtatcgagacggagttcggcgtcacgtgtaccttccacgggcatcgtcggttgagc
cccgacgaggtggcccgctatctgttccgccgggtggtgtcctgggggcgcagttcgaac
gtcttcctgcggaacggggcgcgactgtatctcgatgtcggttcgcaccccgagtacgcc
accgccgagtgcgacgacctgctccagctcgtcgagcacgatcatgccggtgagcgggtc
ctcgaggaactgctcatcgacgccgagcagcgtctcgccgaggagggcatcggcggcgac
atcttcctgttcaagaacaacaccgactcggcgggcaactcctacggctgccacgagaac
tatctcgtcgcccgtgtcggcgagttctcccgcatctccgatgtgctgctgccgttcctg
gtgacccgccagttgatctgcggcgccgggaaggtgctgcagacccccaaggccgccacc
ttctgcctgtcgcaacgcgccgagcacatctgggagggtgtctcctcggcgaccacccgg
tcgcggccgatcatcaacacccgcgacgagccgcacgccgacgccgagaagtaccggcgc
ctgcacgtgatcgtcggggactcgaacatgtccgagaccaccaccatgctcaaggtgggg
tcggcggcgctggtgctcgagatgatcgaggccggggtgccgttccgggacttcgcgctc
gacaacccgatccgcgccatccgcgaggtctcccacgacctgacgggccggcgtccggtg
cgcctggccggcggccggcaggccagcgccctggacatccagcgcgaataccacgcgcgg
gccgtggaatatctgcaccagcgcgaacccgacccgcacgtcgcgcaggtggtggacctg
tggggccgcgtcctcgacgccgtcgaatcgcaggacttcgcgaaggtcgacaccgagatc
gactgggtgatcaagcgcaagctgttccagcgctaccaggaccgctacaacatggagctg
tcggatccgaagatcgcgcagctcgacctggcctaccacgacatcaaacgcggccgcggt
gtgttcgacctgctgcagcgcaagggtctggcggcgcgggcgaccgacgacgagtccgtc
gacgcggcggtgaacaccccaccgcagaccacccgggcgaagctgcgcggtgatttcatc
gccgccgcgcaggccgcgggccgcgatttcaccgtcgactgggtgcatctgaagctcaac
gatcaggcgcagcgcaccgtgttgtgcaaggacccgttccggtcggtggacgaacgcgtc
gaacggctcatcgcctccatgtga
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