Rhodococcus sp. RDE2: RDE2_38480
Help
Entry
RDE2_38480 CDS
T11469
Name
(GenBank) putative exodeoxyribonuclease III protein XthA
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
rhrd Rhodococcus sp. RDE2
Pathway
rhrd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rhrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RDE2_38480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhrd03400
]
RDE2_38480
Enzymes [BR:
rhrd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
RDE2_38480
DNA repair and recombination proteins [BR:
rhrd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
RDE2_38480
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
BDB62054
LinkDB
All DBs
Position
4135133..4135936
Genome browser
AA seq
267 aa
AA seq
DB search
MRLATWNVNSVRARTDRILDWLQRTDTDVLAMQETKCKDEQFPYERFEELGYRVAHVGLS
QWNGVAIASRVGLDDVQIGFEDQPGFSKDPEVDPALEARAIGATCAGVRVWSLYVPNGRD
LNDPHYTYKLDWLAKLRADAHAWATAAPEQPIALVGDWNVAPTDDDVWDPAFFEGKTHTS
QPERDAFHAFAEVGYTDVVRPYAPGPGVYTYWDYTQLRFPKKQGMRIDFVLGSPAFAARV
TGAEIDRNERKGKGASDHAPVIVDLDL
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
gtgcgccttgctacctggaatgtgaactccgtccgtgctcgtaccgaccgcatcctcgac
tggttgcagcgaaccgacacggatgtgctcgcgatgcaggaaaccaagtgcaaggacgag
cagttcccgtacgaacgcttcgaggaactcggttaccgcgtcgcgcacgtcggactgagc
cagtggaacggtgtggccatcgcgtcgcgcgtgggcctcgacgacgtgcagatcggcttc
gaggaccagcccggtttctccaaggacccggaggtcgatccggcgctcgaggcgcgggcg
atcggggcgacgtgcgcgggtgtgcgcgtgtggagcctgtacgtccccaacggtcgcgac
ctcaacgacccgcactacacctacaaactcgactggctcgccaagctgcgcgccgacgcg
cacgcctgggccaccgcagcgcccgagcagcccatcgcgctggtcggcgactggaacgtc
gcccccaccgacgacgacgtgtgggatccggccttcttcgagggcaagacgcacacctcg
cagcccgagcgcgacgccttccacgcgttcgccgaggtcggctacaccgatgtggtccgt
ccgtacgcgcccggccccggggtctacacctactgggactacacccagctgcgcttcccc
aagaagcagggcatgcggatcgacttcgtgctcgggtcgccggccttcgcggcacgggtg
acgggcgccgagatcgaccgcaacgaacgcaagggcaagggcgcgagcgaccacgcaccg
gtcatcgtcgacctcgacctctga
DBGET
integrated database retrieval system
