Rhodococcoides fascians PBTS 2: A3Q41_00161
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Entry
A3Q41_00161 CDS
T05030
Symbol
deaD_1
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhs
Rhodococcoides fascians PBTS 2
Pathway
rhs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3Q41_00161 (deaD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhs03019
]
A3Q41_00161 (deaD_1)
03009 Ribosome biogenesis [BR:
rhs03009
]
A3Q41_00161 (deaD_1)
Enzymes [BR:
rhs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A3Q41_00161 (deaD_1)
Messenger RNA biogenesis [BR:
rhs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A3Q41_00161 (deaD_1)
Ribosome biogenesis [BR:
rhs03009
]
Prokaryotic type
rRNA helicases
A3Q41_00161 (deaD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
AAA_19
CMS1
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-ProteinID:
AMY21486
UniProt:
A0A143QF62
LinkDB
All DBs
Position
complement(173748..175517)
Genome browser
AA seq
589 aa
AA seq
DB search
MTSDETSSSPPVHAGESSSTADDDITFADLGIDERVLKALSDVGYESPSPIQAATIPPLM
AGNDVVGLAQTGTGKTAAFAVPILSRLDVSRRSPQALVLAPTRELALQVAEAFGKYATHI
PGLHILPIYGGQAYGIQLSGLRKGAQIIVGTPGRVIDHLEKGTLDLSGLEYLVLDEADEM
LKMGFQEDVERILSDTPEYKQVALFSATMPAAIRKISKQYLHDPVEITVKTKTSTAPNIT
QRYVQVAHQRKLEALTRIFEVEEFEAMIMFVRTKQATEELAEKLRARGFSAAAINGDIVQ
AQRERTIGQLKNGQIDILVATDVAARGLDVDRISHVINYDIPHDTESYVHRIGRTGRAGR
AGQALLFVAPRERHLLKAIERATRQPITEMQLPSVDDVNAQRVTKFKDSITESLGNENLA
LFRRLIEDYEREHDVPLVDIAAALAIQSRDGEAFLLKPEPPAPPRAPREPREPRPPRTFD
EDAASSHHRKTGQEMATYRISVGKRHHVAPGAIVGAIANEGGLRRSDFGHISIRPDHSLV
ELPADLADETVEALRRTRISGVLIQLQPDSGPPGRSGGPRGGGKFKGKR
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
gtgacgtctgacgagacgagttcgtcccctcccgtccacgcaggtgagtcttcttcgaca
gcggatgacgacatcacttttgccgatctcggaatagacgagcgggtcctgaaggccctg
agcgacgtcggatacgagagcccgtcgcccatccaggcggccaccatcccgccgttgatg
gcgggcaacgacgtcgtcggcctcgcgcagaccggaacgggtaagaccgcggcgttcgca
gtgccgatcctgtcccgtctcgacgtctcgcgtcggtcgccgcaggccctggtgctggca
ccgacccgcgagctcgcgctgcaggtggccgaggcgttcggcaagtacgccacccacatc
ccgggtctgcacattctgcccatctacggcggccaggcctacgggatccagctgtccggc
ctgcgcaagggtgcgcagatcatcgtcggcaccccgggtcgcgtcatcgaccacctcgag
aagggcacgctcgacctgtccgggctcgagtacctcgtgctcgacgaggccgacgagatg
ctcaagatggggttccaggaggacgtcgagcgcatcctctccgacactcccgagtacaag
caggtcgcgttgttctcggccacgatgccggccgcgattcgcaagatctccaagcagtac
ctgcacgatccggtggagatcaccgtcaagaccaagacgtcgacggcaccgaacatcacg
cagcgctacgtgcaggtggcgcatcagcgcaagctcgaggcgctcactcgaatcttcgag
gtcgaagagttcgaggccatgatcatgttcgtgcgcaccaagcaggccaccgaagagctc
gccgagaagttgcgcgcccggggcttctccgccgccgcgatcaacggcgacatcgtgcag
gcacagcgtgagcgcaccatcggccagctcaagaacggccagatcgacattctggtggcc
accgacgtggcggctcgtggtctcgacgtcgaccgcatctcgcacgtcatcaactacgac
atcccgcacgacaccgagtcctacgtgcaccgcatcggtcgtaccggccgcgcgggtcgc
gccggtcaggctcttctgttcgtcgcgccccgggagcgtcacctgctcaaggccatcgag
cgcgcgacgcggcagcccatcaccgagatgcagctccccagcgtcgacgacgtcaatgcg
caacgtgtgacgaagttcaaggactccatcaccgagagcctcggcaacgagaatctggcg
ctgttccgtcgtctcatcgaggactacgagcgcgagcacgacgtgccgctggtcgacatc
gcagcagctcttgccatccagtcgcgcgacggcgaagccttcctgctcaagcccgagccg
cctgccccgccgcgggcaccccgcgagcctcgggagccgcggccaccgcggacgttcgac
gaggatgcggccagctcgcaccaccgcaagaccggccaggagatggcgacgtaccggatc
agcgtcggtaagcgtcatcacgttgctcccggtgccatcgtcggtgccatcgccaacgaa
ggcggtctgcgtcgaagcgacttcgggcacatcagcattcgccccgaccattcgctggtc
gagttgcctgccgacctcgccgacgagacggtcgaggcgctgcgtcgtacccgcatcagc
ggtgtgctgattcagctgcagcccgattccggtcctcccggacgtagtggcggaccgcgc
ggcggcggaaagttcaagggcaagcgctag
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