Rhodococcoides fascians PBTS 2: A3Q41_00294
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Entry
A3Q41_00294 CDS
T05030
Symbol
alkA_1
Name
(GenBank) putative bifunctional transcriptional activator/DNA repair enzyme AlkA
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
rhs
Rhodococcoides fascians PBTS 2
Pathway
rhs03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rhs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
A3Q41_00294 (alkA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rhs03000
]
A3Q41_00294 (alkA_1)
03400 DNA repair and recombination proteins [BR:
rhs03400
]
A3Q41_00294 (alkA_1)
Enzymes [BR:
rhs01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
A3Q41_00294 (alkA_1)
Transcription factors [BR:
rhs03000
]
Prokaryotic type
Helix-turn-helix
AraC family
A3Q41_00294 (alkA_1)
DNA repair and recombination proteins [BR:
rhs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
A3Q41_00294 (alkA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
PKS_DE
Fucose_iso_N1
Motif
Other DBs
NCBI-ProteinID:
AMY21618
UniProt:
A0A143QFU3
LinkDB
All DBs
Position
314122..315588
Genome browser
AA seq
488 aa
AA seq
DB search
MSSERQVQELDFDRCYRAVSSRDARFDGQFFTAVSTTGIYCRPSCPARTPKPGNVSFLAT
AAAAQQSGYRACRRCQPDATPGSPRWNIHSDLSSRAMRLISDGAVERGGVDGLASTLGYS
SRQLTRVLTAEVGAGPLALARAHRAHTARTLIQTTDMSMADIAFAAGFSSVRQFNDTVKE
VFAVDPTTLRREAHRSAVPTAGGTVTLRLPYRPPLDRGWVEWFLRGHVVEGIESFSDDGE
YVRSLQLPHAAGLVALRILDGFVSAALTLQDMRDLAPAVARIRHLLDLDADPLAVDEALR
ADPQLAPSVEAHPGIRALGVVDGAEMLLRTVIGQQISLKAAATHTARLVDALGAPLDFGD
GRVGRLFPDAAVIAERGHEVLTGPAARVQTVIRVADAIASGTVALHPAREGPDLERELLA
LKGIGPWTARYVVMRLLGDPDVLLDTDLVVRQGAQALDISLKNSQRWAPWRSYVSMHLWI
TALERRQA
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgaacggcaggtgcaagaactggacttcgatcggtgttatcgcgcggtctcc
tcgcgtgacgcacggttcgacggccagttcttcaccgccgtctccaccaccggcatctac
tgtcgaccttcctgcccggcacgcacccccaagcccggcaacgtctcgtttttggccacg
gcagcagcggcccaacaatccggctaccgcgcctgccgacgttgccagcccgacgccact
cccggctccccacgatggaacatccactcagatctgagttctcgtgcgatgcggctgatc
tccgacggagccgtcgagcgcgggggcgtcgacggcctcgccagcaccctcggctactcg
agccgccaactgactcgcgttctgacggcagaagtgggtgccgggccgctcgcgttggct
cgcgcccatcgcgcgcataccgcccgcacgttgatccagaccaccgacatgtcgatggcc
gacatcgccttcgccgccggcttctcgagcgtccgccagttcaacgacaccgtcaaagag
gtcttcgcggtcgatccgacgaccctgcggcgagaagcacaccgctcggccgtacctact
gcgggtggcaccgtcacgttgcgcctgccgtaccgcccgccgctggaccgcggctgggtc
gagtggtttctccgaggccacgtggtcgagggcatcgaatcgttttccgacgacggcgaa
tacgtgcgttcactgcagttaccgcacgctgccggactggtggcactgcgcatcctggac
ggattcgtcagcgccgcactgactctgcaggacatgcgcgacctcgctccggccgtggcc
aggattcgacacctgctcgatctcgacgccgatccgcttgccgtcgacgaagccctacgc
gccgacccccaactcgcgccgagcgtcgaggcccatccgggcatcagggccctcggggtc
gtcgacggggcggagatgttgctgcgcaccgtcatcgggcaacagatctcgctgaaggca
gcggccacccacaccgccaggctcgtcgacgcgctcggggcaccactggatttcggcgac
ggacgcgtcggacggctgttccccgacgctgccgtcatcgccgaacgcggccacgaggtc
ctcaccggcccggcggctcgggtccagaccgtcatccgcgtcgccgacgccatcgcgtcg
ggaacggtggcattgcaccccgcgcgggagggtcccgatctggaacgagaactgctcgcg
ctgaagggaatcgggccgtggacggcccgctatgtcgtcatgcgactgctgggcgacccc
gacgttctgctcgacaccgatctcgttgtccgccaaggcgcgcaggcgctggacatttcg
ttgaagaactcccaacgctgggcaccgtggcgttcgtacgtctcgatgcacctgtggatc
accgcactggaaagaaggcaggcatga
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