Rhodococcoides fascians PBTS 2: A3Q41_02769
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Entry
A3Q41_02769 CDS
T05030
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rhs
Rhodococcoides fascians PBTS 2
Brite
KEGG Orthology (KO) [BR:
rhs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rhs03016
]
A3Q41_02769 (rtcB)
Enzymes [BR:
rhs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A3Q41_02769 (rtcB)
Transfer RNA biogenesis [BR:
rhs03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A3Q41_02769 (rtcB)
Prokaryotic type
tRNA splicing ligases
A3Q41_02769 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AMY24063
UniProt:
A0A143QLL7
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All DBs
Position
2835633..2836814
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AA seq
393 aa
AA seq
DB search
MPPNKVGLRLLNWASQLEDKTLGQARETASMPFVHPHVALMPDAHSGMGSAVGTVIPTLG
AVIPAAVGVDIGCGMIGVRTEFTFSDLGGRNLKDLRLAIEASIPLSPGNYNVGVDRWQFT
APKLLELEELAARDCVELNHSPQWREQLGSLGGGNHFAELCLDETDRVWLFLHSGSRGVG
NKIAKKHIGIAQRLCAQWWISLPNKDLAYLPESSREFGQYIRELKWAQRFAYLNRAEMMD
RFGAVFAEWMGTDDHREVERVNCHHNYTVKETHAHKDVWLTRKGAVDAHEGVKAIIPGSM
GTRSYVVVGKGSKAGLCSAPHGAGRQFSRTEARKRFTHENLQERMKGIEFRDSADFIDEI
PDAYKSIDVVMEDARDLVGVEHELRQILNVKGT
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgcccccgaacaaggtgggcttacggctgctcaattgggcgtcacagctcgaggacaag
acgctcgggcaggctcgcgaaacagcatcgatgccgttcgtgcatccgcacgtcgctttg
atgcccgacgcgcacagcggcatgggaagtgctgtaggaacagtcattccgacgttgggt
gccgtgattcccgccgccgtcggtgtcgacatcggctgcggaatgatcggtgtccgaacg
gaattcaccttcagtgacctgggtggacggaacctgaaagatctgcgtctggcgatcgag
gccagcatccccctctcgcccggcaactacaacgtcggtgtcgatcgatggcagttcact
gcgccaaagctgctcgaactcgaggagttggcggccagggactgtgtagagctgaaccac
tcacctcagtggcgggagcagctcggttcgttaggcggcggcaatcactttgccgagttg
tgcctcgacgagaccgatcgagtctggctgtttctgcacagtgggtcgaggggcgtcggc
aacaagatcgcgaagaagcacatcgggattgcgcagcgtctgtgtgcgcagtggtggatc
tcgttgccgaacaaggacttggcgtacctgcccgagagctcccgtgaattcgggcagtac
atccgggaattgaagtgggcgcagcggttcgcgtacctgaaccgggccgagatgatggac
cggttcggcgcggtatttgccgaatggatgggaacggacgaccatcgcgaggtcgagcgg
gtcaattgccatcacaattacacggtgaaggaaacgcacgcgcacaaggacgtgtggctc
acccgtaaaggtgcagtggacgcacacgagggtgtgaaggcgatcattcccggatcaatg
ggaacgcgctcgtacgtggtggtcggaaagggttccaaggccggcctgtgctcggctcct
cacggtgccggtcggcagttctctcggaccgaggccaggaagcggttcacccacgagaac
ctgcaggagcggatgaaggggatcgagtttcgcgacagtgcagacttcatcgacgaaatt
cccgacgcctacaagtccatcgatgtcgtgatggaggacgcgcgcgacctggtgggcgtc
gagcacgagctacgccagattctcaacgtcaaggggacctga
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